Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18556 | 3' | -54.2 | NC_004682.1 | + | 9436 | 0.67 | 0.674922 |
Target: 5'- uUCGCUCGGucACCGAcgcAGCUgccCGGAC-GCu -3' miRNA: 3'- uGGUGAGCU--UGGCU---UCGA---GCCUGuCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 28093 | 0.7 | 0.521085 |
Target: 5'- -aCGCUCGGGCgUGGcuGCUCGcGGCGGCg -3' miRNA: 3'- ugGUGAGCUUG-GCUu-CGAGC-CUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 3173 | 0.7 | 0.531776 |
Target: 5'- cACCACggCGGGCCaGGGCgCGGGCAaccGCg -3' miRNA: 3'- -UGGUGa-GCUUGGcUUCGaGCCUGU---CG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 4949 | 0.69 | 0.608374 |
Target: 5'- gGCUACgaCGAcacccCCGguGCUCGGGCGGUc -3' miRNA: 3'- -UGGUGa-GCUu----GGCuuCGAGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 47077 | 0.69 | 0.608374 |
Target: 5'- aGCCGCcCGGAUagGAGGUgguugccCGGACGGCg -3' miRNA: 3'- -UGGUGaGCUUGg-CUUCGa------GCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 11509 | 0.68 | 0.630579 |
Target: 5'- cCCACUCa-----GGGCUCGGGCAGCc -3' miRNA: 3'- uGGUGAGcuuggcUUCGAGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 21316 | 0.68 | 0.640578 |
Target: 5'- gACaACUCGGGCUGggGCagugagaccgccuUCGG-CGGCu -3' miRNA: 3'- -UGgUGAGCUUGGCuuCG-------------AGCCuGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 30373 | 0.68 | 0.641689 |
Target: 5'- gGCuCGcCUCGcGCUGGAGCUUGGcgcuCAGCc -3' miRNA: 3'- -UG-GU-GAGCuUGGCUUCGAGCCu---GUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 6857 | 0.67 | 0.674922 |
Target: 5'- gGCCcgaACUcCGuugugucccAACUGAucgAGCUUGGACAGCg -3' miRNA: 3'- -UGG---UGA-GC---------UUGGCU---UCGAGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 42525 | 0.7 | 0.51048 |
Target: 5'- --uGCUCGAuguacCCGAcguGGCUCGG-CGGCg -3' miRNA: 3'- uggUGAGCUu----GGCU---UCGAGCCuGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 15317 | 0.71 | 0.479233 |
Target: 5'- cGCCugUCaAGCUGGAGCUgGGA-GGCg -3' miRNA: 3'- -UGGugAGcUUGGCUUCGAgCCUgUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 2944 | 0.71 | 0.439096 |
Target: 5'- aACCugaUCGAcuuCUGggGCgCGGGCGGCg -3' miRNA: 3'- -UGGug-AGCUu--GGCuuCGaGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 31986 | 0.83 | 0.082631 |
Target: 5'- gGCCAUcUGGACCGGcuGCUCGGGCGGCg -3' miRNA: 3'- -UGGUGaGCUUGGCUu-CGAGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 14670 | 0.8 | 0.138032 |
Target: 5'- gGCCugUgGAcGCCGAccGGCUgGGACAGCa -3' miRNA: 3'- -UGGugAgCU-UGGCU--UCGAgCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 33052 | 0.79 | 0.15009 |
Target: 5'- cCCGCgu--GCCGggGUUCGGACGGCu -3' miRNA: 3'- uGGUGagcuUGGCuuCGAGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 4875 | 0.77 | 0.202847 |
Target: 5'- aGCCACgCGGAgUGAagGGCUCGGugAGCc -3' miRNA: 3'- -UGGUGaGCUUgGCU--UCGAGCCugUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 18960 | 0.75 | 0.270975 |
Target: 5'- cGCCAaggagGGGCUGAAGUUCGGugAGCa -3' miRNA: 3'- -UGGUgag--CUUGGCUUCGAGCCugUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 5864 | 0.75 | 0.295471 |
Target: 5'- uGCCACuggcuguugaguacgUCGAGCgCGuuGCUCGcGACGGCg -3' miRNA: 3'- -UGGUG---------------AGCUUG-GCuuCGAGC-CUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 1046 | 0.73 | 0.379991 |
Target: 5'- cGCUACUaCGAGCCGuccgacuggcaguacGCcCGGACAGCg -3' miRNA: 3'- -UGGUGA-GCUUGGCuu-------------CGaGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 47436 | 0.72 | 0.391747 |
Target: 5'- cGCC-CUCGAACgGAGcCUCGGuguCGGCg -3' miRNA: 3'- -UGGuGAGCUUGgCUUcGAGCCu--GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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