miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18556 3' -54.2 NC_004682.1 + 40407 1.12 0.00073
Target:  5'- aACCACUCGAACCGAAGCUCGGACAGCa -3'
miRNA:   3'- -UGGUGAGCUUGGCUUCGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 18338 0.85 0.059992
Target:  5'- gGCCcguuCUCGGGCCGAGGCUgGGugAGCu -3'
miRNA:   3'- -UGGu---GAGCUUGGCUUCGAgCCugUCG- -5'
18556 3' -54.2 NC_004682.1 + 31986 0.83 0.082631
Target:  5'- gGCCAUcUGGACCGGcuGCUCGGGCGGCg -3'
miRNA:   3'- -UGGUGaGCUUGGCUu-CGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 14670 0.8 0.138032
Target:  5'- gGCCugUgGAcGCCGAccGGCUgGGACAGCa -3'
miRNA:   3'- -UGGugAgCU-UGGCU--UCGAgCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 33052 0.79 0.15009
Target:  5'- cCCGCgu--GCCGggGUUCGGACGGCu -3'
miRNA:   3'- uGGUGagcuUGGCuuCGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 4875 0.77 0.202847
Target:  5'- aGCCACgCGGAgUGAagGGCUCGGugAGCc -3'
miRNA:   3'- -UGGUGaGCUUgGCU--UCGAGCCugUCG- -5'
18556 3' -54.2 NC_004682.1 + 11006 0.75 0.270974
Target:  5'- cGCgGCUggcaagagCGcAGCCGAGGCaUCGGGCGGCg -3'
miRNA:   3'- -UGgUGA--------GC-UUGGCUUCG-AGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 18960 0.75 0.270975
Target:  5'- cGCCAaggagGGGCUGAAGUUCGGugAGCa -3'
miRNA:   3'- -UGGUgag--CUUGGCUUCGAGCCugUCG- -5'
18556 3' -54.2 NC_004682.1 + 5864 0.75 0.295471
Target:  5'- uGCCACuggcuguugaguacgUCGAGCgCGuuGCUCGcGACGGCg -3'
miRNA:   3'- -UGGUG---------------AGCUUG-GCuuCGAGC-CUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 41984 0.74 0.299968
Target:  5'- uACgGCgUCGGGCCGgcGCUCGGACucauAGUa -3'
miRNA:   3'- -UGgUG-AGCUUGGCuuCGAGCCUG----UCG- -5'
18556 3' -54.2 NC_004682.1 + 7696 0.74 0.315342
Target:  5'- gACCGCcUGGACCGGAGCgUGG-CGGCu -3'
miRNA:   3'- -UGGUGaGCUUGGCUUCGaGCCuGUCG- -5'
18556 3' -54.2 NC_004682.1 + 33818 0.73 0.339503
Target:  5'- uCUGCUCGAACUGggGCUUGaGGCccuGCu -3'
miRNA:   3'- uGGUGAGCUUGGCuuCGAGC-CUGu--CG- -5'
18556 3' -54.2 NC_004682.1 + 1046 0.73 0.379991
Target:  5'- cGCUACUaCGAGCCGuccgacuggcaguacGCcCGGACAGCg -3'
miRNA:   3'- -UGGUGA-GCUUGGCuu-------------CGaGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 47436 0.72 0.391747
Target:  5'- cGCC-CUCGAACgGAGcCUCGGuguCGGCg -3'
miRNA:   3'- -UGGuGAGCUUGgCUUcGAGCCu--GUCG- -5'
18556 3' -54.2 NC_004682.1 + 15944 0.72 0.410287
Target:  5'- cGCCAacggCGAGCCGggGUUCuGGACucgucGCu -3'
miRNA:   3'- -UGGUga--GCUUGGCuuCGAG-CCUGu----CG- -5'
18556 3' -54.2 NC_004682.1 + 2944 0.71 0.439096
Target:  5'- aACCugaUCGAcuuCUGggGCgCGGGCGGCg -3'
miRNA:   3'- -UGGug-AGCUu--GGCuuCGaGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 34464 0.71 0.458931
Target:  5'- --aGCUCGcGCCgGAAGUUCGaGACGGCc -3'
miRNA:   3'- uggUGAGCuUGG-CUUCGAGC-CUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 15317 0.71 0.479233
Target:  5'- cGCCugUCaAGCUGGAGCUgGGA-GGCg -3'
miRNA:   3'- -UGGugAGcUUGGCUUCGAgCCUgUCG- -5'
18556 3' -54.2 NC_004682.1 + 36113 0.7 0.499965
Target:  5'- cACCACcgUCGaAGCCGAA-CUCGGGCAuGUc -3'
miRNA:   3'- -UGGUG--AGC-UUGGCUUcGAGCCUGU-CG- -5'
18556 3' -54.2 NC_004682.1 + 42525 0.7 0.51048
Target:  5'- --uGCUCGAuguacCCGAcguGGCUCGG-CGGCg -3'
miRNA:   3'- uggUGAGCUu----GGCU---UCGAGCCuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.