Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18556 | 3' | -54.2 | NC_004682.1 | + | 38317 | 0.67 | 0.674922 |
Target: 5'- gACCAUgaacgCGAACUc-AGCUucgcaaCGGACAGCg -3' miRNA: 3'- -UGGUGa----GCUUGGcuUCGA------GCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 8058 | 0.68 | 0.630579 |
Target: 5'- uCCACaUgGGACCGAAGCcCGGuCuGCc -3' miRNA: 3'- uGGUG-AgCUUGGCUUCGaGCCuGuCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 41073 | 0.68 | 0.619471 |
Target: 5'- cACCAgUCGGcucuCCGAGGaC-CGGAUGGCc -3' miRNA: 3'- -UGGUgAGCUu---GGCUUC-GaGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 33818 | 0.73 | 0.339503 |
Target: 5'- uCUGCUCGAACUGggGCUUGaGGCccuGCu -3' miRNA: 3'- uGGUGAGCUUGGCuuCGAGC-CUGu--CG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 7696 | 0.74 | 0.315342 |
Target: 5'- gACCGCcUGGACCGGAGCgUGG-CGGCu -3' miRNA: 3'- -UGGUGaGCUUGGCUUCGaGCCuGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 41984 | 0.74 | 0.299968 |
Target: 5'- uACgGCgUCGGGCCGgcGCUCGGACucauAGUa -3' miRNA: 3'- -UGgUG-AGCUUGGCuuCGAGCCUG----UCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 11006 | 0.75 | 0.270974 |
Target: 5'- cGCgGCUggcaagagCGcAGCCGAGGCaUCGGGCGGCg -3' miRNA: 3'- -UGgUGA--------GC-UUGGCUUCG-AGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 40407 | 1.12 | 0.00073 |
Target: 5'- aACCACUCGAACCGAAGCUCGGACAGCa -3' miRNA: 3'- -UGGUGAGCUUGGCUUCGAGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 15944 | 0.72 | 0.410287 |
Target: 5'- cGCCAacggCGAGCCGggGUUCuGGACucgucGCu -3' miRNA: 3'- -UGGUga--GCUUGGCuuCGAG-CCUGu----CG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 29925 | 0.68 | 0.65279 |
Target: 5'- cACCACuUCGcaGGCCGAagaugauccacAGCUUGGggaacuGCAGCu -3' miRNA: 3'- -UGGUG-AGC--UUGGCU-----------UCGAGCC------UGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 7285 | 0.68 | 0.630579 |
Target: 5'- gGCUACaUCGAcACCGu-GCUgagGGACAGCg -3' miRNA: 3'- -UGGUG-AGCU-UGGCuuCGAg--CCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 43600 | 0.67 | 0.685932 |
Target: 5'- cACCACagcgUGAACCGAgccuguuccAGCgUCGGcaugaACGGCg -3' miRNA: 3'- -UGGUGa---GCUUGGCU---------UCG-AGCC-----UGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 36834 | 0.66 | 0.729332 |
Target: 5'- uGCCGC-CgGGGCCGAAcacacCGGACGGCu -3' miRNA: 3'- -UGGUGaG-CUUGGCUUcga--GCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 49249 | 0.66 | 0.739964 |
Target: 5'- uGCCACUUGGugCGAuccgggauGGCgUCGGcguCGGUc -3' miRNA: 3'- -UGGUGAGCUugGCU--------UCG-AGCCu--GUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 5417 | 0.66 | 0.739964 |
Target: 5'- gACCACucaUCGAGCgGAGGUgaggCGcGAaaCAGCa -3' miRNA: 3'- -UGGUG---AGCUUGgCUUCGa---GC-CU--GUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 25568 | 0.66 | 0.739964 |
Target: 5'- cGCCACUgGGccacGCCGuGGGCcuugacgCGGugGGCu -3' miRNA: 3'- -UGGUGAgCU----UGGC-UUCGa------GCCugUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 15238 | 0.66 | 0.778245 |
Target: 5'- aGCC-CUCGGACCacuucGAguucacguucaugcGGCUCauggaGGGCGGCg -3' miRNA: 3'- -UGGuGAGCUUGG-----CU--------------UCGAG-----CCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 4734 | 0.66 | 0.78026 |
Target: 5'- gGCCACgaaguggaUCGAguaccacGCCGAAGCcgacgacugCGGAgacCAGCa -3' miRNA: 3'- -UGGUG--------AGCU-------UGGCUUCGa--------GCCU---GUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 21703 | 0.66 | 0.781264 |
Target: 5'- cGCCgaACUCGAACUGGAGaacgccgaaCUCcGGGCgaAGCu -3' miRNA: 3'- -UGG--UGAGCUUGGCUUC---------GAG-CCUG--UCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 36143 | 0.66 | 0.781264 |
Target: 5'- cGCCACgCGAcgugugGCCGAugcugucccAGC-CGGuCGGCg -3' miRNA: 3'- -UGGUGaGCU------UGGCU---------UCGaGCCuGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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