miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 7851 0.67 0.500888
Target:  5'- aCCGGcaugcUCUACGACGCCcuGGA-GGCcCCc -3'
miRNA:   3'- -GGCC-----AGGUGCUGCGGc-UCUgCCGuGG- -5'
18559 3' -59.2 NC_004682.1 + 8864 0.72 0.261373
Target:  5'- gCCGG-CC-CGACGCCGuAGGCGuCACg -3'
miRNA:   3'- -GGCCaGGuGCUGCGGC-UCUGCcGUGg -5'
18559 3' -59.2 NC_004682.1 + 9561 0.7 0.324294
Target:  5'- aCCGG-CCA-GACGCUGuucGACGcGUACCu -3'
miRNA:   3'- -GGCCaGGUgCUGCGGCu--CUGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 9766 0.68 0.45242
Target:  5'- uCCGGUCCuCGGagaGCCGAcuggugaaGACGGUcgaGCg -3'
miRNA:   3'- -GGCCAGGuGCUg--CGGCU--------CUGCCG---UGg -5'
18559 3' -59.2 NC_004682.1 + 9910 0.66 0.531043
Target:  5'- uCUGGcgcgaUCCGuCGACGCCGAcGuACGcCGCCa -3'
miRNA:   3'- -GGCC-----AGGU-GCUGCGGCU-C-UGCcGUGG- -5'
18559 3' -59.2 NC_004682.1 + 10105 0.72 0.261373
Target:  5'- gCCGGUCCagaucgagaagcACGAaGCCGAGugGGacgaGCa -3'
miRNA:   3'- -GGCCAGG------------UGCUgCGGCUCugCCg---UGg -5'
18559 3' -59.2 NC_004682.1 + 10627 0.69 0.36385
Target:  5'- gUCGG-CCACucgaugGGCGgCGGGAUGGuCGCCg -3'
miRNA:   3'- -GGCCaGGUG------CUGCgGCUCUGCC-GUGG- -5'
18559 3' -59.2 NC_004682.1 + 10999 0.66 0.559763
Target:  5'- uCCcGUUCGCGGCuggcaagagcgcaGCCGAGgcaucggGCGGCGCg -3'
miRNA:   3'- -GGcCAGGUGCUG-------------CGGCUC-------UGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 11796 0.69 0.389138
Target:  5'- aCCGGUgCCGucuCGGCGUCGuGGAcCGGCgagGCCg -3'
miRNA:   3'- -GGCCA-GGU---GCUGCGGC-UCU-GCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 11845 0.66 0.531043
Target:  5'- cCCGuUCCACGGCGauGAGAcgccuuCGGCGUCg -3'
miRNA:   3'- -GGCcAGGUGCUGCggCUCU------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 11957 0.66 0.572207
Target:  5'- gCGGaCCAaGAuCGCCGAGGCaucGCGCUc -3'
miRNA:   3'- gGCCaGGUgCU-GCGGCUCUGc--CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 12652 0.69 0.389138
Target:  5'- cCCGGUCCuucuguCGACuCCGuAGGaGGCACa -3'
miRNA:   3'- -GGCCAGGu-----GCUGcGGC-UCUgCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 12783 0.73 0.224633
Target:  5'- aCCGGUuggaccgacCCAcugaacgcgcuguCGGCGCUGAGGCaccucGGCACCg -3'
miRNA:   3'- -GGCCA---------GGU-------------GCUGCGGCUCUG-----CCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 13398 0.68 0.45242
Target:  5'- gCGGUCUACGAagGCCcguuCGGCAUCc -3'
miRNA:   3'- gGCCAGGUGCUg-CGGcucuGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 13574 0.7 0.321271
Target:  5'- aCCGGgcugguugaccacCCACGGCcaCCGuGGCGGCAUCc -3'
miRNA:   3'- -GGCCa------------GGUGCUGc-GGCuCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 13581 0.72 0.23324
Target:  5'- aCCGGaugcgguucccgcgcUCCugGgACGCCGAGcACGGCGu- -3'
miRNA:   3'- -GGCC---------------AGGugC-UGCGGCUC-UGCCGUgg -5'
18559 3' -59.2 NC_004682.1 + 13852 0.71 0.281171
Target:  5'- aUGGUCagCACGucaAgGCCGAGACGGUuCCg -3'
miRNA:   3'- gGCCAG--GUGC---UgCGGCUCUGCCGuGG- -5'
18559 3' -59.2 NC_004682.1 + 14128 0.7 0.319768
Target:  5'- cCCGcGUCCAgGcCGUCGuccucccgauccuccGGGCGGCGCUg -3'
miRNA:   3'- -GGC-CAGGUgCuGCGGC---------------UCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 14259 0.7 0.331943
Target:  5'- -aGGUCCagaccuACGACuCCGAcGGCGGCaaGCCg -3'
miRNA:   3'- ggCCAGG------UGCUGcGGCU-CUGCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 14364 0.69 0.372152
Target:  5'- gCGcUCUACGACGCUGuGAa-GCACCa -3'
miRNA:   3'- gGCcAGGUGCUGCGGCuCUgcCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.