miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 462 0.66 0.530027
Target:  5'- gCCGGuaUCCAgCGGCcuccaggGCCGcuuccGGCGGCGCUc -3'
miRNA:   3'- -GGCC--AGGU-GCUG-------CGGCu----CUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 1319 0.73 0.213578
Target:  5'- uUGGUCCGCGACagguaugGCCGucACGGCuacGCCu -3'
miRNA:   3'- gGCCAGGUGCUG-------CGGCucUGCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 1945 0.66 0.561832
Target:  5'- cUCGGUCCcCGAUGgCGAGAucUGGauCGCUg -3'
miRNA:   3'- -GGCCAGGuGCUGCgGCUCU--GCC--GUGG- -5'
18559 3' -59.2 NC_004682.1 + 2161 0.66 0.572207
Target:  5'- aCCGGUCCACaAgGCCccaaggGAGACacggguucccaaGGC-CCa -3'
miRNA:   3'- -GGCCAGGUGcUgCGG------CUCUG------------CCGuGG- -5'
18559 3' -59.2 NC_004682.1 + 2377 0.75 0.148645
Target:  5'- aCCGGUCC-CGAaggGCCacaggguGAGACGGgACCg -3'
miRNA:   3'- -GGCCAGGuGCUg--CGG-------CUCUGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 2504 0.67 0.481209
Target:  5'- aCGGaUCaaggGCGACGacaaCGGcGACGGCAUCg -3'
miRNA:   3'- gGCC-AGg---UGCUGCg---GCU-CUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 3653 0.67 0.481209
Target:  5'- aCCGugaGUaCCGC--CGaCGAGGCGGCACCg -3'
miRNA:   3'- -GGC---CA-GGUGcuGCgGCUCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 4383 0.72 0.261373
Target:  5'- gCCGccgCCACgGGCGCgGAGcGCGGUGCCg -3'
miRNA:   3'- -GGCca-GGUG-CUGCGgCUC-UGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 4618 0.67 0.500888
Target:  5'- cCCGGaggCCACGcucGCuGCCGAGAUcgaGGcCAUCg -3'
miRNA:   3'- -GGCCa--GGUGC---UG-CGGCUCUG---CC-GUGG- -5'
18559 3' -59.2 NC_004682.1 + 4661 0.73 0.219599
Target:  5'- cCCGGaCgGggUGACGaCCGcGACGGCACCg -3'
miRNA:   3'- -GGCCaGgU--GCUGC-GGCuCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 4894 0.66 0.541243
Target:  5'- cUCGGUgagCC-CG-CGCUacucGGGCGGCACCa -3'
miRNA:   3'- -GGCCA---GGuGCuGCGGc---UCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 4930 0.67 0.491003
Target:  5'- cCCGGaCgACGGCGagcCCGAGuGCGGCuACUc -3'
miRNA:   3'- -GGCCaGgUGCUGC---GGCUC-UGCCG-UGG- -5'
18559 3' -59.2 NC_004682.1 + 5113 0.67 0.51086
Target:  5'- gUGGUCgACGccGCGCCGAuccUGGCGCg -3'
miRNA:   3'- gGCCAGgUGC--UGCGGCUcu-GCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 5296 0.69 0.389138
Target:  5'- gCCGGcCC-CGGCGC--AGGCGGguCCa -3'
miRNA:   3'- -GGCCaGGuGCUGCGgcUCUGCCguGG- -5'
18559 3' -59.2 NC_004682.1 + 5545 0.67 0.471511
Target:  5'- aCGGUCuCGCGACGgaucaaCGGGACGaacccgaaCACCg -3'
miRNA:   3'- gGCCAG-GUGCUGCg-----GCUCUGCc-------GUGG- -5'
18559 3' -59.2 NC_004682.1 + 6308 0.74 0.174388
Target:  5'- aCGGUCCACGGCaCCG-GACaGGCcgACCc -3'
miRNA:   3'- gGCCAGGUGCUGcGGCuCUG-CCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 6340 0.72 0.255031
Target:  5'- -gGGUCCGgGAcucccCGCCGAcACGGCGCg -3'
miRNA:   3'- ggCCAGGUgCU-----GCGGCUcUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 6542 0.67 0.471511
Target:  5'- cCCGGUCUacgagaACGugGCCGAccucuugcaGCGGuCACg -3'
miRNA:   3'- -GGCCAGG------UGCugCGGCUc--------UGCC-GUGg -5'
18559 3' -59.2 NC_004682.1 + 7205 0.7 0.309393
Target:  5'- -aGGUCauCugGAuCGCCccuGACGGCACCc -3'
miRNA:   3'- ggCCAG--GugCU-GCGGcu-CUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 7693 0.68 0.442101
Target:  5'- aCGGUCaCGCGAUGCaCGGcgcaaucGAgGGCaACCu -3'
miRNA:   3'- gGCCAG-GUGCUGCG-GCU-------CUgCCG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.