miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 39039 1.13 0.000257
Target:  5'- gCCGGUCCACGACGCCGAGACGGCACCg -3'
miRNA:   3'- -GGCCAGGUGCUGCGGCUCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 24993 0.8 0.067941
Target:  5'- gCCGGg-UACGACGCCGAcucGGCGGCAUCu -3'
miRNA:   3'- -GGCCagGUGCUGCGGCU---CUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 2377 0.75 0.148645
Target:  5'- aCCGGUCC-CGAaggGCCacaggguGAGACGGgACCg -3'
miRNA:   3'- -GGCCAGGuGCUg--CGG-------CUCUGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 24640 0.75 0.157091
Target:  5'- uCCGGUgCCAgGAUGUCGAGGC-GUGCCg -3'
miRNA:   3'- -GGCCA-GGUgCUGCGGCUCUGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 19819 0.75 0.157091
Target:  5'- cCCGaUCCAgGuCGCCGAGGCGcugauGCGCCg -3'
miRNA:   3'- -GGCcAGGUgCuGCGGCUCUGC-----CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 40337 0.75 0.165537
Target:  5'- gUGGUUCACcGCGUCGAGcGCGGuCACCg -3'
miRNA:   3'- gGCCAGGUGcUGCGGCUC-UGCC-GUGG- -5'
18559 3' -59.2 NC_004682.1 + 6308 0.74 0.174388
Target:  5'- aCGGUCCACGGCaCCG-GACaGGCcgACCc -3'
miRNA:   3'- gGCCAGGUGCUGcGGCuCUG-CCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 1319 0.73 0.213578
Target:  5'- uUGGUCCGCGACagguaugGCCGucACGGCuacGCCu -3'
miRNA:   3'- gGCCAGGUGCUG-------CGGCucUGCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 33927 0.73 0.214119
Target:  5'- gCCGaGgCCACaGCGCCGAcacCGGCACCg -3'
miRNA:   3'- -GGC-CaGGUGcUGCGGCUcu-GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 4661 0.73 0.219599
Target:  5'- cCCGGaCgGggUGACGaCCGcGACGGCACCg -3'
miRNA:   3'- -GGCCaGgU--GCUGC-GGCuCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 12783 0.73 0.224633
Target:  5'- aCCGGUuggaccgacCCAcugaacgcgcuguCGGCGCUGAGGCaccucGGCACCg -3'
miRNA:   3'- -GGCCA---------GGU-------------GCUGCGGCUCUG-----CCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 29237 0.73 0.225198
Target:  5'- -aGGUCUGCGAgacaGCCGuGGACGGCGgCg -3'
miRNA:   3'- ggCCAGGUGCUg---CGGC-UCUGCCGUgG- -5'
18559 3' -59.2 NC_004682.1 + 13581 0.72 0.23324
Target:  5'- aCCGGaugcgguucccgcgcUCCugGgACGCCGAGcACGGCGu- -3'
miRNA:   3'- -GGCC---------------AGGugC-UGCGGCUC-UGCCGUgg -5'
18559 3' -59.2 NC_004682.1 + 24402 0.72 0.248815
Target:  5'- aCGGUgCugGACGCUGAGGgcaacccgaucCGGCugGCCc -3'
miRNA:   3'- gGCCAgGugCUGCGGCUCU-----------GCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 6340 0.72 0.255031
Target:  5'- -gGGUCCGgGAcucccCGCCGAcACGGCGCg -3'
miRNA:   3'- ggCCAGGUgCU-----GCGGCUcUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 10105 0.72 0.261373
Target:  5'- gCCGGUCCagaucgagaagcACGAaGCCGAGugGGacgaGCa -3'
miRNA:   3'- -GGCCAGG------------UGCUgCGGCUCugCCg---UGg -5'
18559 3' -59.2 NC_004682.1 + 8864 0.72 0.261373
Target:  5'- gCCGG-CC-CGACGCCGuAGGCGuCACg -3'
miRNA:   3'- -GGCCaGGuGCUGCGGC-UCUGCcGUGg -5'
18559 3' -59.2 NC_004682.1 + 4383 0.72 0.261373
Target:  5'- gCCGccgCCACgGGCGCgGAGcGCGGUGCCg -3'
miRNA:   3'- -GGCca-GGUG-CUGCGgCUC-UGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 25612 0.72 0.261373
Target:  5'- gCCGGUCUcCGgcucGCGCCGu-ACGGUGCCg -3'
miRNA:   3'- -GGCCAGGuGC----UGCGGCucUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 44404 0.71 0.274442
Target:  5'- cCCGGuUCCGCuACGCgGAcGACGGgAUCg -3'
miRNA:   3'- -GGCC-AGGUGcUGCGgCU-CUGCCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.