Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 4712 | 0.66 | 0.419275 |
Target: 5'- uGUCGCUC--GGCGCUG-CCgACGCGGc -3' miRNA: 3'- -CAGCGGGuaCUGCGGCuGG-UGCGCCa -5' |
|||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 48835 | 0.66 | 0.419275 |
Target: 5'- uUCGCCCA-GGCGgUGACgUACGuCGGg -3' miRNA: 3'- cAGCGGGUaCUGCgGCUG-GUGC-GCCa -5' |
|||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 4281 | 0.66 | 0.437819 |
Target: 5'- aUCGCCCA-GGCgcuucuGCCGAUCAuCGCGa- -3' miRNA: 3'- cAGCGGGUaCUG------CGGCUGGU-GCGCca -5' |
|||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 31339 | 0.66 | 0.437819 |
Target: 5'- gGUCGCCUgcGAUGCaGACCAUGacgaccCGGUg -3' miRNA: 3'- -CAGCGGGuaCUGCGgCUGGUGC------GCCA- -5' |
|||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 36698 | 0.66 | 0.445367 |
Target: 5'- -cCGCCCGgaggaucgggagGACGaCGGCCuggACGCGGg -3' miRNA: 3'- caGCGGGUa-----------CUGCgGCUGG---UGCGCCa -5' |
|||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 9596 | 0.66 | 0.447266 |
Target: 5'- -cCGUCCG-GGC-UCGACUACGCGGa -3' miRNA: 3'- caGCGGGUaCUGcGGCUGGUGCGCCa -5' |
|||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 29425 | 0.66 | 0.447266 |
Target: 5'- gGUCGCCCGUGAacaCGUCGauGCC-CuCGGUc -3' miRNA: 3'- -CAGCGGGUACU---GCGGC--UGGuGcGCCA- -5' |
|||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 29657 | 0.66 | 0.447266 |
Target: 5'- uUCG-CCGUGgagguaGCGCCGACaCACGaUGGUg -3' miRNA: 3'- cAGCgGGUAC------UGCGGCUG-GUGC-GCCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home