miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18564 3' -52.6 NC_004682.1 + 35890 1.1 0.00157
Target:  5'- cUCGUCACCGUCCACGAUGACAACCAGg -3'
miRNA:   3'- -AGCAGUGGCAGGUGCUACUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 37406 0.79 0.210231
Target:  5'- gUGUUGCCGUCCucguCGGUGACGACCu- -3'
miRNA:   3'- aGCAGUGGCAGGu---GCUACUGUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 10025 0.75 0.343167
Target:  5'- aUCGUgGUCGUCCACGGUGGCGcUCGGg -3'
miRNA:   3'- -AGCAgUGGCAGGUGCUACUGUuGGUC- -5'
18564 3' -52.6 NC_004682.1 + 44405 0.73 0.444052
Target:  5'- cUGgCACCGUCCAUGAUcGAgGACCAc -3'
miRNA:   3'- aGCaGUGGCAGGUGCUA-CUgUUGGUc -5'
18564 3' -52.6 NC_004682.1 + 38371 0.73 0.468195
Target:  5'- cUCGUCcCCGUCCGCGAgGAUGAagacuucccgguaccCCAGg -3'
miRNA:   3'- -AGCAGuGGCAGGUGCUaCUGUU---------------GGUC- -5'
18564 3' -52.6 NC_004682.1 + 44065 0.72 0.504562
Target:  5'- cUUGUCGCCGUCCGUGAUGgaggcguACAugucACCAGc -3'
miRNA:   3'- -AGCAGUGGCAGGUGCUAC-------UGU----UGGUC- -5'
18564 3' -52.6 NC_004682.1 + 45215 0.71 0.548626
Target:  5'- gUCGUCACCGaCCGCGAgugcGCGguuCCAGc -3'
miRNA:   3'- -AGCAGUGGCaGGUGCUac--UGUu--GGUC- -5'
18564 3' -52.6 NC_004682.1 + 25882 0.71 0.574978
Target:  5'- cUCGUCGgCGuuggucuugucggucUCCugGGUGACccAGCCAGa -3'
miRNA:   3'- -AGCAGUgGC---------------AGGugCUACUG--UUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 8310 0.71 0.592709
Target:  5'- aCGcCACCGUCCGCucGAUGuucGCCAGc -3'
miRNA:   3'- aGCaGUGGCAGGUG--CUACuguUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 34763 0.7 0.603837
Target:  5'- cCGUUGCCGUgCGCGAacGCcGCCAGg -3'
miRNA:   3'- aGCAGUGGCAgGUGCUacUGuUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 34115 0.7 0.61499
Target:  5'- gUCGUCGCCGaaCGcCGAgaACAGCCGGg -3'
miRNA:   3'- -AGCAGUGGCagGU-GCUacUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 20150 0.7 0.626159
Target:  5'- cUCGUCGCUGaCCgacaGCGAUGGCGAUCc- -3'
miRNA:   3'- -AGCAGUGGCaGG----UGCUACUGUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 9296 0.7 0.626159
Target:  5'- -gGUCAuCUGgaaCCGCGAgGACGGCCAGu -3'
miRNA:   3'- agCAGU-GGCa--GGUGCUaCUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 10995 0.7 0.648502
Target:  5'- aUCGUC-CCGUUCGCGGcUGGCAagaGCgCAGc -3'
miRNA:   3'- -AGCAGuGGCAGGUGCU-ACUGU---UG-GUC- -5'
18564 3' -52.6 NC_004682.1 + 49997 0.69 0.659656
Target:  5'- cUGUCACC-UCCugGGUGGuCAGCgGGc -3'
miRNA:   3'- aGCAGUGGcAGGugCUACU-GUUGgUC- -5'
18564 3' -52.6 NC_004682.1 + 16271 0.69 0.659656
Target:  5'- gUGUCACCGUCgAUG-UGAacacCGACCGGc -3'
miRNA:   3'- aGCAGUGGCAGgUGCuACU----GUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 29453 0.69 0.670783
Target:  5'- -gGUCauGCCGUCCgauGCGAUGuuGACCAc -3'
miRNA:   3'- agCAG--UGGCAGG---UGCUACugUUGGUc -5'
18564 3' -52.6 NC_004682.1 + 26399 0.69 0.670783
Target:  5'- aCGUCGCCGggucgaacgUCgGCGggGcCAGCCGGa -3'
miRNA:   3'- aGCAGUGGC---------AGgUGCuaCuGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 22738 0.69 0.681873
Target:  5'- gCGcUCGCCG-CCGCGA--GCAGCCAc -3'
miRNA:   3'- aGC-AGUGGCaGGUGCUacUGUUGGUc -5'
18564 3' -52.6 NC_004682.1 + 15970 0.69 0.692914
Target:  5'- cUCGUCGCUGUCCaACGucgGGgAGCCc- -3'
miRNA:   3'- -AGCAGUGGCAGG-UGCua-CUgUUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.