miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18564 3' -52.6 NC_004682.1 + 3036 0.67 0.797056
Target:  5'- cCGUCACCGUUCgaucaggACGA-GGCGGCUg- -3'
miRNA:   3'- aGCAGUGGCAGG-------UGCUaCUGUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 6960 0.66 0.826625
Target:  5'- ---aCACCGUCCugGAgGAguACCGc -3'
miRNA:   3'- agcaGUGGCAGGugCUaCUguUGGUc -5'
18564 3' -52.6 NC_004682.1 + 8310 0.71 0.592709
Target:  5'- aCGcCACCGUCCGCucGAUGuucGCCAGc -3'
miRNA:   3'- aGCaGUGGCAGGUG--CUACuguUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 9296 0.7 0.626159
Target:  5'- -gGUCAuCUGgaaCCGCGAgGACGGCCAGu -3'
miRNA:   3'- agCAGU-GGCa--GGUGCUaCUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 10025 0.75 0.343167
Target:  5'- aUCGUgGUCGUCCACGGUGGCGcUCGGg -3'
miRNA:   3'- -AGCAgUGGCAGGUGCUACUGUuGGUC- -5'
18564 3' -52.6 NC_004682.1 + 10995 0.7 0.648502
Target:  5'- aUCGUC-CCGUUCGCGGcUGGCAagaGCgCAGc -3'
miRNA:   3'- -AGCAGuGGCAGGUGCU-ACUGU---UG-GUC- -5'
18564 3' -52.6 NC_004682.1 + 12023 0.68 0.766815
Target:  5'- cCGUCugCGUUCAagggcuaccuggcCGA-GACGACCAa -3'
miRNA:   3'- aGCAGugGCAGGU-------------GCUaCUGUUGGUc -5'
18564 3' -52.6 NC_004682.1 + 13413 0.66 0.861749
Target:  5'- cCGuUCGgCaUCCACGAaGGCAACCAc -3'
miRNA:   3'- aGC-AGUgGcAGGUGCUaCUGUUGGUc -5'
18564 3' -52.6 NC_004682.1 + 13433 0.66 0.853317
Target:  5'- gUCGUCACCGaCgAgGAcGGCAAcacCCAGa -3'
miRNA:   3'- -AGCAGUGGCaGgUgCUaCUGUU---GGUC- -5'
18564 3' -52.6 NC_004682.1 + 15970 0.69 0.692914
Target:  5'- cUCGUCGCUGUCCaACGucgGGgAGCCc- -3'
miRNA:   3'- -AGCAGUGGCAGG-UGCua-CUgUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 16271 0.69 0.659656
Target:  5'- gUGUCACCGUCgAUG-UGAacacCGACCGGc -3'
miRNA:   3'- aGCAGUGGCAGgUGCuACU----GUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 18102 0.67 0.778069
Target:  5'- cUCGUCACCaUCUACGccGA-GGCCGGu -3'
miRNA:   3'- -AGCAGUGGcAGGUGCuaCUgUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 18195 0.68 0.767845
Target:  5'- gUCGUCACCGgcaaccaCCGCGcAUGGCG-CUAc -3'
miRNA:   3'- -AGCAGUGGCa------GGUGC-UACUGUuGGUc -5'
18564 3' -52.6 NC_004682.1 + 18438 0.67 0.777054
Target:  5'- gCGUCGgagaacucgcugcUCGUCUACGgcGACAGCgGGg -3'
miRNA:   3'- aGCAGU-------------GGCAGGUGCuaCUGUUGgUC- -5'
18564 3' -52.6 NC_004682.1 + 20150 0.7 0.626159
Target:  5'- cUCGUCGCUGaCCgacaGCGAUGGCGAUCc- -3'
miRNA:   3'- -AGCAGUGGCaGG----UGCUACUGUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 20195 0.66 0.853317
Target:  5'- gCGUC-CUGgCCGCGcugucgGGCGACCGGa -3'
miRNA:   3'- aGCAGuGGCaGGUGCua----CUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 21596 0.69 0.714803
Target:  5'- aUCGcCGCCGUCCACGGcUGucucgcaGACCuGa -3'
miRNA:   3'- -AGCaGUGGCAGGUGCU-ACug-----UUGGuC- -5'
18564 3' -52.6 NC_004682.1 + 21901 0.67 0.788137
Target:  5'- gCGUucaCGCUGUCaGCGuuccUGGCGACCAGg -3'
miRNA:   3'- aGCA---GUGGCAGgUGCu---ACUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 22135 0.66 0.835746
Target:  5'- uUCGUCccGCCGccgCCGCGAgugGGCGGCa-- -3'
miRNA:   3'- -AGCAG--UGGCa--GGUGCUa--CUGUUGguc -5'
18564 3' -52.6 NC_004682.1 + 22738 0.69 0.681873
Target:  5'- gCGcUCGCCG-CCGCGA--GCAGCCAc -3'
miRNA:   3'- aGC-AGUGGCaGGUGCUacUGUUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.