miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18566 5' -56 NC_004682.1 + 3152 0.67 0.598606
Target:  5'- cGCAgcaGCCGCCAacUCGggcacCaCGGCGGGCc -3'
miRNA:   3'- -CGUag-CGGCGGU--AGUa----GcGCCGCUUG- -5'
18566 5' -56 NC_004682.1 + 4566 0.73 0.288082
Target:  5'- cGCAaCGCCGCguUCGcucgggCGCuGGCGAGCu -3'
miRNA:   3'- -CGUaGCGGCGguAGUa-----GCG-CCGCUUG- -5'
18566 5' -56 NC_004682.1 + 5257 0.68 0.555039
Target:  5'- -gAUCGCCGCCAUgcUCGCcGCGcuggGGCu -3'
miRNA:   3'- cgUAGCGGCGGUAguAGCGcCGC----UUG- -5'
18566 5' -56 NC_004682.1 + 7450 0.68 0.522978
Target:  5'- cCAUCGCCGCCGUCAgccaGGaccagacgaaGAACa -3'
miRNA:   3'- cGUAGCGGCGGUAGUagcgCCg---------CUUG- -5'
18566 5' -56 NC_004682.1 + 8649 0.66 0.631609
Target:  5'- ---aCGCCGCCGUCugCGCGGUc--- -3'
miRNA:   3'- cguaGCGGCGGUAGuaGCGCCGcuug -5'
18566 5' -56 NC_004682.1 + 10260 0.69 0.451309
Target:  5'- cCAUCGCCGCCggCAUCcCGGuCGucAACc -3'
miRNA:   3'- cGUAGCGGCGGuaGUAGcGCC-GC--UUG- -5'
18566 5' -56 NC_004682.1 + 10560 0.68 0.522978
Target:  5'- gGCAggaCGCCGaCAgaUCAUCGgGGCGGu- -3'
miRNA:   3'- -CGUa--GCGGCgGU--AGUAGCgCCGCUug -5'
18566 5' -56 NC_004682.1 + 10955 0.67 0.576731
Target:  5'- cGCAgaacgCGCU-CCGUCGUCGCccgaacggGGCGAAg -3'
miRNA:   3'- -CGUa----GCGGcGGUAGUAGCG--------CCGCUUg -5'
18566 5' -56 NC_004682.1 + 13173 0.7 0.40447
Target:  5'- cGCAUCGUCGUCAUCAgcgacacgcagauccCGUuccacgaccGGCGGGCg -3'
miRNA:   3'- -CGUAGCGGCGGUAGUa--------------GCG---------CCGCUUG- -5'
18566 5' -56 NC_004682.1 + 13987 0.66 0.679941
Target:  5'- -gAUCGUCGCCucgcaguggccugggGUCAUCGaGGCuGACg -3'
miRNA:   3'- cgUAGCGGCGG---------------UAGUAGCgCCGcUUG- -5'
18566 5' -56 NC_004682.1 + 14140 0.66 0.67557
Target:  5'- -gAUCGCCaGCCAgga--GCGGaCGGACu -3'
miRNA:   3'- cgUAGCGG-CGGUaguagCGCC-GCUUG- -5'
18566 5' -56 NC_004682.1 + 14697 0.66 0.631609
Target:  5'- aGCAUCgGCCaCaCGUCG-CGUGGCGAc- -3'
miRNA:   3'- -CGUAG-CGGcG-GUAGUaGCGCCGCUug -5'
18566 5' -56 NC_004682.1 + 16148 0.68 0.533592
Target:  5'- aGC-UCGaaGCCAUCGagaagucgaugCGCGGCGAGg -3'
miRNA:   3'- -CGuAGCggCGGUAGUa----------GCGCCGCUUg -5'
18566 5' -56 NC_004682.1 + 16221 0.73 0.260244
Target:  5'- cGCucaguUCGCCGCgAUgAUgGCGGCGAuGCg -3'
miRNA:   3'- -CGu----AGCGGCGgUAgUAgCGCCGCU-UG- -5'
18566 5' -56 NC_004682.1 + 19165 0.66 0.67557
Target:  5'- cCGUUGCCGCC-UCGUCcaguuCGGCacuccGAACg -3'
miRNA:   3'- cGUAGCGGCGGuAGUAGc----GCCG-----CUUG- -5'
18566 5' -56 NC_004682.1 + 20591 0.66 0.67557
Target:  5'- gGCGUgGUCGCUGgcgagCGUgGUGGCGAc- -3'
miRNA:   3'- -CGUAgCGGCGGUa----GUAgCGCCGCUug -5'
18566 5' -56 NC_004682.1 + 21594 0.66 0.620595
Target:  5'- uCAUCGCCGCCGUCca--CGGCu--- -3'
miRNA:   3'- cGUAGCGGCGGUAGuagcGCCGcuug -5'
18566 5' -56 NC_004682.1 + 23124 0.67 0.565858
Target:  5'- aGCAUCaCCGUCAggugaGUUGCGGCcagGAGCc -3'
miRNA:   3'- -CGUAGcGGCGGUag---UAGCGCCG---CUUG- -5'
18566 5' -56 NC_004682.1 + 23322 0.66 0.631609
Target:  5'- ---aCGCCGCCGUCGaugacaaGCGGCa--- -3'
miRNA:   3'- cguaGCGGCGGUAGUag-----CGCCGcuug -5'
18566 5' -56 NC_004682.1 + 24382 0.7 0.394384
Target:  5'- --uUCGCCuCCAaCGUCcCGGCGAACg -3'
miRNA:   3'- cguAGCGGcGGUaGUAGcGCCGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.