miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18566 5' -56 NC_004682.1 + 43732 0.66 0.630508
Target:  5'- -gAUCGCucgCGCCGUCGUaGCGGCccgaccgGAACc -3'
miRNA:   3'- cgUAGCG---GCGGUAGUAgCGCCG-------CUUG- -5'
18566 5' -56 NC_004682.1 + 27517 0.67 0.565858
Target:  5'- ---gUGCCGCuUGUCAUCGaCGGCGGc- -3'
miRNA:   3'- cguaGCGGCG-GUAGUAGC-GCCGCUug -5'
18566 5' -56 NC_004682.1 + 39328 0.67 0.565858
Target:  5'- cGCuucCGCuUGCCGUUggCGCGGCGGc- -3'
miRNA:   3'- -CGua-GCG-GCGGUAGuaGCGCCGCUug -5'
18566 5' -56 NC_004682.1 + 10955 0.67 0.576731
Target:  5'- cGCAgaacgCGCU-CCGUCGUCGCccgaacggGGCGAAg -3'
miRNA:   3'- -CGUa----GCGGcGGUAGUAGCG--------CCGCUUg -5'
18566 5' -56 NC_004682.1 + 49341 0.67 0.596412
Target:  5'- -gGUCGCCGUagAUCAUCGCugucuccucucaGCGGACu -3'
miRNA:   3'- cgUAGCGGCGg-UAGUAGCGc-----------CGCUUG- -5'
18566 5' -56 NC_004682.1 + 3152 0.67 0.598606
Target:  5'- cGCAgcaGCCGCCAacUCGggcacCaCGGCGGGCc -3'
miRNA:   3'- -CGUag-CGGCGGU--AGUa----GcGCCGCUUG- -5'
18566 5' -56 NC_004682.1 + 36569 0.67 0.609591
Target:  5'- uGCGgcUUGCCGCCGUCGgagUCGUaGGUcuGGACc -3'
miRNA:   3'- -CGU--AGCGGCGGUAGU---AGCG-CCG--CUUG- -5'
18566 5' -56 NC_004682.1 + 32601 0.66 0.620595
Target:  5'- gGCGUCaGCCGCC-UCAU-GCcaGCGGGCc -3'
miRNA:   3'- -CGUAG-CGGCGGuAGUAgCGc-CGCUUG- -5'
18566 5' -56 NC_004682.1 + 33796 0.66 0.620595
Target:  5'- gGCGggaGCCGCCugggccUCGUCGuCGGCagGGGCc -3'
miRNA:   3'- -CGUag-CGGCGGu-----AGUAGC-GCCG--CUUG- -5'
18566 5' -56 NC_004682.1 + 16148 0.68 0.533592
Target:  5'- aGC-UCGaaGCCAUCGagaagucgaugCGCGGCGAGg -3'
miRNA:   3'- -CGuAGCggCGGUAGUa----------GCGCCGCUUg -5'
18566 5' -56 NC_004682.1 + 10560 0.68 0.522978
Target:  5'- gGCAggaCGCCGaCAgaUCAUCGgGGCGGu- -3'
miRNA:   3'- -CGUa--GCGGCgGU--AGUAGCgCCGCUug -5'
18566 5' -56 NC_004682.1 + 7450 0.68 0.522978
Target:  5'- cCAUCGCCGCCGUCAgccaGGaccagacgaaGAACa -3'
miRNA:   3'- cGUAGCGGCGGUAGUagcgCCg---------CUUG- -5'
18566 5' -56 NC_004682.1 + 28100 0.73 0.260244
Target:  5'- gGCGUgGCUGCUcgCG--GCGGCGAGCg -3'
miRNA:   3'- -CGUAgCGGCGGuaGUagCGCCGCUUG- -5'
18566 5' -56 NC_004682.1 + 45572 0.71 0.367718
Target:  5'- aGCAgcaGCC-CCAg---CGCGGCGAGCa -3'
miRNA:   3'- -CGUag-CGGcGGUaguaGCGCCGCUUG- -5'
18566 5' -56 NC_004682.1 + 24382 0.7 0.394384
Target:  5'- --uUCGCCuCCAaCGUCcCGGCGAACg -3'
miRNA:   3'- cguAGCGGcGGUaGUAGcGCCGCUUG- -5'
18566 5' -56 NC_004682.1 + 36324 0.69 0.461229
Target:  5'- gGCGagUGCCaggGCCGUCGUCGCgGGUGAc- -3'
miRNA:   3'- -CGUa-GCGG---CGGUAGUAGCG-CCGCUug -5'
18566 5' -56 NC_004682.1 + 28689 0.69 0.481407
Target:  5'- gGCGUgccgaUGCCGCCcac-UCGCGGCGGcgGCg -3'
miRNA:   3'- -CGUA-----GCGGCGGuaguAGCGCCGCU--UG- -5'
18566 5' -56 NC_004682.1 + 33582 0.68 0.502005
Target:  5'- -uGUCGCCGaCCAUCugcUCGUaGGCGuccuGCa -3'
miRNA:   3'- cgUAGCGGC-GGUAGu--AGCG-CCGCu---UG- -5'
18566 5' -56 NC_004682.1 + 37126 0.68 0.512447
Target:  5'- aCGUCGCCGCCGUagccgaaCGUGuGCGAc- -3'
miRNA:   3'- cGUAGCGGCGGUAgua----GCGC-CGCUug -5'
18566 5' -56 NC_004682.1 + 48173 0.68 0.512447
Target:  5'- -gGUCGCUGCCGccaCAcCG-GGCGAGCa -3'
miRNA:   3'- cgUAGCGGCGGUa--GUaGCgCCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.