miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18568 5' -56.6 NC_004682.1 + 34121 1.07 0.00104
Target:  5'- gCCGAACGCCGAGAACAGCCGGGACAUc -3'
miRNA:   3'- -GGCUUGCGGCUCUUGUCGGCCCUGUA- -5'
18568 5' -56.6 NC_004682.1 + 39356 0.79 0.107602
Target:  5'- gUCGAACGCCGGGGAUuucGCUGGGGCc- -3'
miRNA:   3'- -GGCUUGCGGCUCUUGu--CGGCCCUGua -5'
18568 5' -56.6 NC_004682.1 + 11142 0.77 0.134452
Target:  5'- gCCGAAgGUCGAGAcguuCAGCCGGGAg-- -3'
miRNA:   3'- -GGCUUgCGGCUCUu---GUCGGCCCUgua -5'
18568 5' -56.6 NC_004682.1 + 14675 0.76 0.176633
Target:  5'- gUGGACGCCGAc--CGGCUGGGACAg -3'
miRNA:   3'- gGCUUGCGGCUcuuGUCGGCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 32906 0.75 0.191418
Target:  5'- gCGAgACGaCCGAGAACGacagguGCCGGGACGc -3'
miRNA:   3'- gGCU-UGC-GGCUCUUGU------CGGCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 19819 0.74 0.223677
Target:  5'- cCCGAuccagguCGCCGAGGcgcugauGC-GCCGGGGCGUg -3'
miRNA:   3'- -GGCUu------GCGGCUCU-------UGuCGGCCCUGUA- -5'
18568 5' -56.6 NC_004682.1 + 7670 0.72 0.289513
Target:  5'- gCCGAGguCGCCaAGAA-GGCCGGGACGa -3'
miRNA:   3'- -GGCUU--GCGGcUCUUgUCGGCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 45762 0.71 0.351779
Target:  5'- gCGggUG-CGGGAGCAGCCGGuGCGg -3'
miRNA:   3'- gGCuuGCgGCUCUUGUCGGCCcUGUa -5'
18568 5' -56.6 NC_004682.1 + 37140 0.7 0.386293
Target:  5'- gCCGAACGUgugcgaCGAGAucccCAGCCGGuGCGUg -3'
miRNA:   3'- -GGCUUGCG------GCUCUu---GUCGGCCcUGUA- -5'
18568 5' -56.6 NC_004682.1 + 2541 0.7 0.386293
Target:  5'- aUGGAagaCGAGAGCGGCUGGGACu- -3'
miRNA:   3'- gGCUUgcgGCUCUUGUCGGCCCUGua -5'
18568 5' -56.6 NC_004682.1 + 4412 0.69 0.426749
Target:  5'- gCUGGAgucCGCUGAGAGCGGagccuugguccucuaCCGGGGCGa -3'
miRNA:   3'- -GGCUU---GCGGCUCUUGUC---------------GGCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 8994 0.69 0.432458
Target:  5'- gCCGAuaAgGCCGAcGAGCAGUugUGGGACu- -3'
miRNA:   3'- -GGCU--UgCGGCU-CUUGUCG--GCCCUGua -5'
18568 5' -56.6 NC_004682.1 + 50469 0.69 0.442071
Target:  5'- uCCGGGCGCUcccgGAGGGgAGCCgcuugGGGGCGg -3'
miRNA:   3'- -GGCUUGCGG----CUCUUgUCGG-----CCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 10031 0.69 0.461654
Target:  5'- aCCGAACGCgaaGAGAuGCGGaagUGGGACGa -3'
miRNA:   3'- -GGCUUGCGg--CUCU-UGUCg--GCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 20374 0.68 0.481684
Target:  5'- aCGGugGCCGAGcagacCGGUCuGGACAUg -3'
miRNA:   3'- gGCUugCGGCUCuu---GUCGGcCCUGUA- -5'
18568 5' -56.6 NC_004682.1 + 12474 0.68 0.491855
Target:  5'- uCCucGCGgaCGGGGACgAGCCGGGGCu- -3'
miRNA:   3'- -GGcuUGCg-GCUCUUG-UCGGCCCUGua -5'
18568 5' -56.6 NC_004682.1 + 133 0.68 0.498006
Target:  5'- cUCGAcCGCCGgcacgggccggcacAGGGCcacacagAGCCGGGACAc -3'
miRNA:   3'- -GGCUuGCGGC--------------UCUUG-------UCGGCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 3614 0.68 0.50937
Target:  5'- cCCGGAagacguagacaaccUGCCGGGGACGGUgGGGGa-- -3'
miRNA:   3'- -GGCUU--------------GCGGCUCUUGUCGgCCCUgua -5'
18568 5' -56.6 NC_004682.1 + 36818 0.68 0.522938
Target:  5'- uCCaGAugGCCGAacauGCcGCCGGGGCc- -3'
miRNA:   3'- -GG-CUugCGGCUcu--UGuCGGCCCUGua -5'
18568 5' -56.6 NC_004682.1 + 27879 0.68 0.533469
Target:  5'- gCGAGCGCCagGGGAGCAGCgacGACGUa -3'
miRNA:   3'- gGCUUGCGG--CUCUUGUCGgccCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.