Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18568 | 5' | -56.6 | NC_004682.1 | + | 11142 | 0.77 | 0.134452 |
Target: 5'- gCCGAAgGUCGAGAcguuCAGCCGGGAg-- -3' miRNA: 3'- -GGCUUgCGGCUCUu---GUCGGCCCUgua -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 42714 | 0.66 | 0.651475 |
Target: 5'- aCCGGgucgcggccuccaGCGUCGGGAacgggguucgcgACGGCUGGGuCAg -3' miRNA: 3'- -GGCU-------------UGCGGCUCU------------UGUCGGCCCuGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 24646 | 0.66 | 0.630715 |
Target: 5'- gCCaGGAUGUCGAG-GCGuGCCGGGAa-- -3' miRNA: 3'- -GG-CUUGCGGCUCuUGU-CGGCCCUgua -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 50724 | 0.66 | 0.630715 |
Target: 5'- -aGggUGCCGAGAcgggguGCAGaCgGGGugAg -3' miRNA: 3'- ggCuuGCGGCUCU------UGUC-GgCCCugUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 28788 | 0.66 | 0.619786 |
Target: 5'- gCCGucAgGCCGAGAGCGGaCaGGGCGa -3' miRNA: 3'- -GGCu-UgCGGCUCUUGUCgGcCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 31744 | 0.66 | 0.608868 |
Target: 5'- uCCGAGgaaGCCcAGAugAGCCcGGACGa -3' miRNA: 3'- -GGCUUg--CGGcUCUugUCGGcCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 7791 | 0.67 | 0.587101 |
Target: 5'- aCC-GugGCCGAGAAgGaCUGGGACGc -3' miRNA: 3'- -GGcUugCGGCUCUUgUcGGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 28119 | 0.67 | 0.554747 |
Target: 5'- gCGAGCGCggacaGAGAccucgaAGCCGaGGACGUa -3' miRNA: 3'- gGCUUGCGg----CUCUug----UCGGC-CCUGUA- -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 41753 | 0.67 | 0.554747 |
Target: 5'- aUCGAcaGCGaCCGGGAG-AGCUGGGugAa -3' miRNA: 3'- -GGCU--UGC-GGCUCUUgUCGGCCCugUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 3614 | 0.68 | 0.50937 |
Target: 5'- cCCGGAagacguagacaaccUGCCGGGGACGGUgGGGGa-- -3' miRNA: 3'- -GGCUU--------------GCGGCUCUUGUCGgCCCUgua -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 14675 | 0.76 | 0.176633 |
Target: 5'- gUGGACGCCGAc--CGGCUGGGACAg -3' miRNA: 3'- gGCUUGCGGCUcuuGUCGGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 32906 | 0.75 | 0.191418 |
Target: 5'- gCGAgACGaCCGAGAACGacagguGCCGGGACGc -3' miRNA: 3'- gGCU-UGC-GGCUCUUGU------CGGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 37140 | 0.7 | 0.386293 |
Target: 5'- gCCGAACGUgugcgaCGAGAucccCAGCCGGuGCGUg -3' miRNA: 3'- -GGCUUGCG------GCUCUu---GUCGGCCcUGUA- -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 8994 | 0.69 | 0.432458 |
Target: 5'- gCCGAuaAgGCCGAcGAGCAGUugUGGGACu- -3' miRNA: 3'- -GGCU--UgCGGCU-CUUGUCG--GCCCUGua -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 10031 | 0.69 | 0.461654 |
Target: 5'- aCCGAACGCgaaGAGAuGCGGaagUGGGACGa -3' miRNA: 3'- -GGCUUGCGg--CUCU-UGUCg--GCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 133 | 0.68 | 0.498006 |
Target: 5'- cUCGAcCGCCGgcacgggccggcacAGGGCcacacagAGCCGGGACAc -3' miRNA: 3'- -GGCUuGCGGC--------------UCUUG-------UCGGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 34121 | 1.07 | 0.00104 |
Target: 5'- gCCGAACGCCGAGAACAGCCGGGACAUc -3' miRNA: 3'- -GGCUUGCGGCUCUUGUCGGCCCUGUA- -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 2947 | 0.66 | 0.640552 |
Target: 5'- aUCGcAGCGCUcGGAGCacggcagAGCUGGGACGc -3' miRNA: 3'- -GGC-UUGCGGcUCUUG-------UCGGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 41330 | 0.66 | 0.608868 |
Target: 5'- cCUuGACGCCGAacAGCAGCCgcuggGGGACGc -3' miRNA: 3'- -GGcUUGCGGCUc-UUGUCGG-----CCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 18843 | 0.66 | 0.59797 |
Target: 5'- cUCGucuCGCCGcccGAGCAGCCGGucCAg -3' miRNA: 3'- -GGCuu-GCGGCu--CUUGUCGGCCcuGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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