miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18569 3' -62.2 NC_004682.1 + 1998 0.69 0.209408
Target:  5'- cGGcGGUUGGCCcCCcgAGGCCGAcGGCGc -3'
miRNA:   3'- -CCuCCGGUCGGuGG--UCCGGCUaCCGC- -5'
18569 3' -62.2 NC_004682.1 + 2297 0.7 0.19894
Target:  5'- -aAGGCCcccaaGGuCCGuCCGGGCCGAagGGCGa -3'
miRNA:   3'- ccUCCGG-----UC-GGU-GGUCCGGCUa-CCGC- -5'
18569 3' -62.2 NC_004682.1 + 2630 0.68 0.25611
Target:  5'- cGAGGCCGGCguCCuGGUCGAgacaUGGg- -3'
miRNA:   3'- cCUCCGGUCGguGGuCCGGCU----ACCgc -5'
18569 3' -62.2 NC_004682.1 + 3241 0.66 0.341651
Target:  5'- cGAGGCCGGUCGCCAGcgcguccuCCGGgaGCGc -3'
miRNA:   3'- cCUCCGGUCGGUGGUCc-------GGCUacCGC- -5'
18569 3' -62.2 NC_004682.1 + 3971 0.68 0.237666
Target:  5'- --uGGCCAGCauCCAGGCCGAcaacaaGGCu -3'
miRNA:   3'- ccuCCGGUCGguGGUCCGGCUa-----CCGc -5'
18569 3' -62.2 NC_004682.1 + 4625 0.69 0.209408
Target:  5'- uGGAGGUguggggcgaCGGCUACCuGGCCGGUGa-- -3'
miRNA:   3'- -CCUCCG---------GUCGGUGGuCCGGCUACcgc -5'
18569 3' -62.2 NC_004682.1 + 6921 0.73 0.108068
Target:  5'- aGAGGCCAGCCGCCuGGCUcccgcaGggGaGCGc -3'
miRNA:   3'- cCUCCGGUCGGUGGuCCGG------CuaC-CGC- -5'
18569 3' -62.2 NC_004682.1 + 7685 0.67 0.311011
Target:  5'- -aAGGCCGGgacgaCCGCCuGGaCCGGagcgUGGCGg -3'
miRNA:   3'- ccUCCGGUC-----GGUGGuCC-GGCU----ACCGC- -5'
18569 3' -62.2 NC_004682.1 + 7933 0.67 0.31847
Target:  5'- gGGGGGCCGGCgGgCCAuGaGCa-GUGGCGc -3'
miRNA:   3'- -CCUCCGGUCGgU-GGU-C-CGgcUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 10499 0.73 0.120437
Target:  5'- aGGAGGCCGGUgACgCAGGC--GUGGCc -3'
miRNA:   3'- -CCUCCGGUCGgUG-GUCCGgcUACCGc -5'
18569 3' -62.2 NC_004682.1 + 10756 0.67 0.303685
Target:  5'- -cGGGCCAcacagcGCCucUCGGGCgCGGUGGUGg -3'
miRNA:   3'- ccUCCGGU------CGGu-GGUCCG-GCUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 10825 0.66 0.326064
Target:  5'- --cGGUCGGCCACCgaGGGCCuc-GGCc -3'
miRNA:   3'- ccuCCGGUCGGUGG--UCCGGcuaCCGc -5'
18569 3' -62.2 NC_004682.1 + 11231 0.72 0.141475
Target:  5'- aGGAGGCCAagaccGCUACgCGGGCUGA-GGUc -3'
miRNA:   3'- -CCUCCGGU-----CGGUG-GUCCGGCUaCCGc -5'
18569 3' -62.2 NC_004682.1 + 11489 0.67 0.296492
Target:  5'- aGGAGGCCGgugcuacggcuGCCGCCGcGCCaacGGCa -3'
miRNA:   3'- -CCUCCGGU-----------CGGUGGUcCGGcuaCCGc -5'
18569 3' -62.2 NC_004682.1 + 13366 0.69 0.231769
Target:  5'- gGGGGGCCGGaugaGCCuucUCGAUGGCGg -3'
miRNA:   3'- -CCUCCGGUCgg--UGGuccGGCUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 13759 0.68 0.258656
Target:  5'- uGGAGGUCGGCaaccugauggacaugCGCCAGGCCcacuaccucaagGGUGGa- -3'
miRNA:   3'- -CCUCCGGUCG---------------GUGGUCCGG------------CUACCgc -5'
18569 3' -62.2 NC_004682.1 + 13836 0.66 0.366025
Target:  5'- cGAGGCCGGaagGCCgAGGCCaaccUGGCa -3'
miRNA:   3'- cCUCCGGUCgg-UGG-UCCGGcu--ACCGc -5'
18569 3' -62.2 NC_004682.1 + 14352 0.67 0.282505
Target:  5'- uGGAGGC--GCUGCgAGGCCGGaacgaGGCGu -3'
miRNA:   3'- -CCUCCGguCGGUGgUCCGGCUa----CCGC- -5'
18569 3' -62.2 NC_004682.1 + 16862 0.67 0.313978
Target:  5'- uGGuGGCUGGCCuCCuGGCUGGUcuccccucgcucaucGGCGc -3'
miRNA:   3'- -CCuCCGGUCGGuGGuCCGGCUA---------------CCGC- -5'
18569 3' -62.2 NC_004682.1 + 16904 0.66 0.348838
Target:  5'- -cAGGCUA-CCGCCAaagcaguGGCCGAUGGa- -3'
miRNA:   3'- ccUCCGGUcGGUGGU-------CCGGCUACCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.