Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18569 | 3' | -62.2 | NC_004682.1 | + | 10499 | 0.73 | 0.120437 |
Target: 5'- aGGAGGCCGGUgACgCAGGC--GUGGCc -3' miRNA: 3'- -CCUCCGGUCGgUG-GUCCGgcUACCGc -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 13836 | 0.66 | 0.366025 |
Target: 5'- cGAGGCCGGaagGCCgAGGCCaaccUGGCa -3' miRNA: 3'- cCUCCGGUCgg-UGG-UCCGGcu--ACCGc -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 18333 | 0.66 | 0.341651 |
Target: 5'- aGGaAGGCCcGUUcUCGGGCCGAggcugGGUGa -3' miRNA: 3'- -CC-UCCGGuCGGuGGUCCGGCUa----CCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 26289 | 0.67 | 0.321492 |
Target: 5'- aGAGGCUccacaGGCC-CCGcaguGGCCGAccccgagcauuggguUGGCGg -3' miRNA: 3'- cCUCCGG-----UCGGuGGU----CCGGCU---------------ACCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 18372 | 0.67 | 0.31847 |
Target: 5'- -cGGGUCAGUCugUGGgcgaagcguucGCCGAUGGCa -3' miRNA: 3'- ccUCCGGUCGGugGUC-----------CGGCUACCGc -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 16862 | 0.67 | 0.313978 |
Target: 5'- uGGuGGCUGGCCuCCuGGCUGGUcuccccucgcucaucGGCGc -3' miRNA: 3'- -CCuCCGGUCGGuGGuCCGGCUA---------------CCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 17416 | 0.67 | 0.282505 |
Target: 5'- uGGAGuCCGGUCugCAGGC-GAUGGg- -3' miRNA: 3'- -CCUCcGGUCGGugGUCCGgCUACCgc -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 33786 | 0.68 | 0.243687 |
Target: 5'- cGGGGGCCucggcgggAGCCGCCuGGGCCucgucgucGGCa -3' miRNA: 3'- -CCUCCGG--------UCGGUGG-UCCGGcua-----CCGc -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 18014 | 0.68 | 0.243687 |
Target: 5'- -cAGGCggCAGCCACCA--UCGGUGGCGu -3' miRNA: 3'- ccUCCG--GUCGGUGGUccGGCUACCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 11231 | 0.72 | 0.141475 |
Target: 5'- aGGAGGCCAagaccGCUACgCGGGCUGA-GGUc -3' miRNA: 3'- -CCUCCGGU-----CGGUG-GUCCGGCUaCCGc -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 35123 | 0.7 | 0.184095 |
Target: 5'- ---cGCCGGCCACCAcgcacuGCgCGAUGGCGu -3' miRNA: 3'- ccucCGGUCGGUGGUc-----CG-GCUACCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 2297 | 0.7 | 0.19894 |
Target: 5'- -aAGGCCcccaaGGuCCGuCCGGGCCGAagGGCGa -3' miRNA: 3'- ccUCCGG-----UC-GGU-GGUCCGGCUa-CCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 17800 | 0.69 | 0.204115 |
Target: 5'- --cGGCCcucGCCACCgcgauGGGUCaGAUGGCGg -3' miRNA: 3'- ccuCCGGu--CGGUGG-----UCCGG-CUACCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 1998 | 0.69 | 0.209408 |
Target: 5'- cGGcGGUUGGCCcCCcgAGGCCGAcGGCGc -3' miRNA: 3'- -CCuCCGGUCGGuGG--UCCGGCUaCCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 13366 | 0.69 | 0.231769 |
Target: 5'- gGGGGGCCGGaugaGCCuucUCGAUGGCGg -3' miRNA: 3'- -CCUCCGGUCgg--UGGuccGGCUACCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 33987 | 1.11 | 0.000143 |
Target: 5'- aGGAGGCCAGCCACCAGGCCGAUGGCGg -3' miRNA: 3'- -CCUCCGGUCGGUGGUCCGGCUACCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 16904 | 0.66 | 0.348838 |
Target: 5'- -cAGGCUA-CCGCCAaagcaguGGCCGAUGGa- -3' miRNA: 3'- ccUCCGGUcGGUGGU-------CCGGCUACCgc -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 3241 | 0.66 | 0.341651 |
Target: 5'- cGAGGCCGGUCGCCAGcgcguccuCCGGgaGCGc -3' miRNA: 3'- cCUCCGGUCGGUGGUCc-------GGCUacCGC- -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 10825 | 0.66 | 0.326064 |
Target: 5'- --cGGUCGGCCACCgaGGGCCuc-GGCc -3' miRNA: 3'- ccuCCGGUCGGUGG--UCCGGcuaCCGc -5' |
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18569 | 3' | -62.2 | NC_004682.1 | + | 7933 | 0.67 | 0.31847 |
Target: 5'- gGGGGGCCGGCgGgCCAuGaGCa-GUGGCGc -3' miRNA: 3'- -CCUCCGGUCGgU-GGU-C-CGgcUACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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