Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18570 | 5' | -59.7 | NC_004682.1 | + | 7297 | 0.68 | 0.34089 |
Target: 5'- aCCGUGCUGAGgG--ACAGCGaCGGCAa -3' miRNA: 3'- -GGUACGGCUCgCggUGUCGCgGCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 27874 | 0.68 | 0.34089 |
Target: 5'- aCCAcG-CGAGCGCCaggggaGCAGCGaCGACGu -3' miRNA: 3'- -GGUaCgGCUCGCGG------UGUCGCgGCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 38354 | 0.68 | 0.34089 |
Target: 5'- aCCAUGuuGuGCuGCCACAGCGa-GAUc -3' miRNA: 3'- -GGUACggCuCG-CGGUGUCGCggCUGu -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 43703 | 0.68 | 0.356391 |
Target: 5'- cCCA-GCCGAGCGUCuucucggGCAGguaccagccgcCGUCGACAg -3' miRNA: 3'- -GGUaCGGCUCGCGG-------UGUC-----------GCGGCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 8849 | 0.68 | 0.365589 |
Target: 5'- aCUAUGaguCCGAGCGCC--GGC-CCGACGc -3' miRNA: 3'- -GGUAC---GGCUCGCGGugUCGcGGCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 36241 | 0.67 | 0.382728 |
Target: 5'- gCCGUGCCcaccgGGGCGguguaCACGuaGCCGACGg -3' miRNA: 3'- -GGUACGG-----CUCGCg----GUGUcgCGGCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 34172 | 0.67 | 0.382728 |
Target: 5'- aCCGcUGCCgcccGAGCGCaugccgCGCAGCGCCuGCu -3' miRNA: 3'- -GGU-ACGG----CUCGCG------GUGUCGCGGcUGu -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 11485 | 0.67 | 0.391495 |
Target: 5'- uCCAaggagGCCG-GUGCUACGGCuGCCGcCGc -3' miRNA: 3'- -GGUa----CGGCuCGCGGUGUCG-CGGCuGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 6351 | 0.67 | 0.391495 |
Target: 5'- uCCccGCCGAcacgGCGCgGgCGGUGCuCGACAa -3' miRNA: 3'- -GGuaCGGCU----CGCGgU-GUCGCG-GCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 33307 | 0.67 | 0.395928 |
Target: 5'- cCCAgugaGCCGAGCacguugccgaucagGCCcgagagcgagguCAGCGCUGGCAu -3' miRNA: 3'- -GGUa---CGGCUCG--------------CGGu-----------GUCGCGGCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 7697 | 0.67 | 0.418569 |
Target: 5'- aCCGccugGaCCgGAGCGUgGCGGCuGCCGACc -3' miRNA: 3'- -GGUa---C-GG-CUCGCGgUGUCG-CGGCUGu -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 45765 | 0.67 | 0.418569 |
Target: 5'- -gGUGCgGgAGCaGCCgguGCGGCGUCGGCGu -3' miRNA: 3'- ggUACGgC-UCG-CGG---UGUCGCGGCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 36170 | 0.67 | 0.418569 |
Target: 5'- cCCA-GCCGgucGGCGuCCACAG-GCCGGu- -3' miRNA: 3'- -GGUaCGGC---UCGC-GGUGUCgCGGCUgu -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 14985 | 0.67 | 0.427843 |
Target: 5'- uCCAcGCCcacaaGGCGUCGguGCGCCGGg- -3' miRNA: 3'- -GGUaCGGc----UCGCGGUguCGCGGCUgu -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 26461 | 0.67 | 0.427843 |
Target: 5'- gUCGUGCCGAucuugcuccCGCCACGGgUGCCGuGCu -3' miRNA: 3'- -GGUACGGCUc--------GCGGUGUC-GCGGC-UGu -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 28842 | 0.66 | 0.436293 |
Target: 5'- gCCGUaGCCGGGUucaCCgacguaguacggaGCAGCGuCCGACAc -3' miRNA: 3'- -GGUA-CGGCUCGc--GG-------------UGUCGC-GGCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 37243 | 0.66 | 0.437238 |
Target: 5'- uUCA-GCCGGauGcCGCCACGGUGgCCGugGg -3' miRNA: 3'- -GGUaCGGCU--C-GCGGUGUCGC-GGCugU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 18070 | 0.66 | 0.44675 |
Target: 5'- uCCAgcacGCC-AGCGCCGaGGCGUaCGACGa -3' miRNA: 3'- -GGUa---CGGcUCGCGGUgUCGCG-GCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 5346 | 0.66 | 0.453476 |
Target: 5'- aCAUcGCUGAGCacggaggcaucaacGCCgACAGCGCaUGGCAc -3' miRNA: 3'- gGUA-CGGCUCG--------------CGG-UGUCGCG-GCUGU- -5' |
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18570 | 5' | -59.7 | NC_004682.1 | + | 49374 | 0.66 | 0.455408 |
Target: 5'- gCC-UGCCGGGaaguugacgggcuCGCCGCuGGCGUCGAg- -3' miRNA: 3'- -GGuACGGCUC-------------GCGGUG-UCGCGGCUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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