miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18570 5' -59.7 NC_004682.1 + 33922 0.98 0.002102
Target:  5'- uCCAUGCCGAG-GCCACAGCGCCGACAc -3'
miRNA:   3'- -GGUACGGCUCgCGGUGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 38026 0.85 0.02094
Target:  5'- uCgGUGCCGAgGUGCCuCAGCGCCGACAg -3'
miRNA:   3'- -GgUACGGCU-CGCGGuGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 25607 0.77 0.082444
Target:  5'- aCCuUGCCGGucuccggcucGCGCCguACGGUGCCGACAg -3'
miRNA:   3'- -GGuACGGCU----------CGCGG--UGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 40610 0.73 0.155065
Target:  5'- gCCAUGC--AGUGCCGC-GUGCCGACGc -3'
miRNA:   3'- -GGUACGgcUCGCGGUGuCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 23400 0.73 0.155065
Target:  5'- gCCGUGaacgacagCGAGaaCGCCAguGCGCCGACGg -3'
miRNA:   3'- -GGUACg-------GCUC--GCGGUguCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 20454 0.73 0.177168
Target:  5'- gCAgcgGCUGAGCGCCAagcucCAGCGCgaGGCGa -3'
miRNA:   3'- gGUa--CGGCUCGCGGU-----GUCGCGg-CUGU- -5'
18570 5' -59.7 NC_004682.1 + 4383 0.72 0.186768
Target:  5'- gCCGccGCCacGGGCGCggagCGCGGUGCCGACAa -3'
miRNA:   3'- -GGUa-CGG--CUCGCG----GUGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 23275 0.72 0.206812
Target:  5'- aCCAgcggcucUGCCGcAGCGCCAguGuCGCCGcCGu -3'
miRNA:   3'- -GGU-------ACGGC-UCGCGGUguC-GCGGCuGU- -5'
18570 5' -59.7 NC_004682.1 + 28690 0.72 0.207349
Target:  5'- gCGUGCCGAuGcCGCCcacucGCGGCGgCGGCGg -3'
miRNA:   3'- gGUACGGCU-C-GCGG-----UGUCGCgGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 7743 0.71 0.235802
Target:  5'- aCCGcaagGCCGuacGCG-CACAGCGUCGGCGu -3'
miRNA:   3'- -GGUa---CGGCu--CGCgGUGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 32693 0.71 0.238215
Target:  5'- aCCAUGCCGGGUagcucugccgccuugGCCGCGaUGuCCGACGc -3'
miRNA:   3'- -GGUACGGCUCG---------------CGGUGUcGC-GGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 40257 0.71 0.241872
Target:  5'- cCCAgugcGUCGAGCGCuCGCAGCG-UGACc -3'
miRNA:   3'- -GGUa---CGGCUCGCG-GUGUCGCgGCUGu -5'
18570 5' -59.7 NC_004682.1 + 47610 0.7 0.248071
Target:  5'- gCCgAUGUCGcccuGUGCCGCGcCGCCGACGu -3'
miRNA:   3'- -GG-UACGGCu---CGCGGUGUcGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 12876 0.7 0.248071
Target:  5'- aCAUGCCGuaCGCaACGGCGuCCGACGu -3'
miRNA:   3'- gGUACGGCucGCGgUGUCGC-GGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 39332 0.7 0.260864
Target:  5'- uCCGcuUGCCGuuGGCGCgGCGGCaGCCGuaGCAc -3'
miRNA:   3'- -GGU--ACGGC--UCGCGgUGUCG-CGGC--UGU- -5'
18570 5' -59.7 NC_004682.1 + 25198 0.7 0.260864
Target:  5'- cCCA-GUgGAGCGCCcggACAGCGCuacuuCGACGg -3'
miRNA:   3'- -GGUaCGgCUCGCGG---UGUCGCG-----GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 33566 0.7 0.281053
Target:  5'- cCCA-GCaGAGCGCCGuuGuCGCCGACc -3'
miRNA:   3'- -GGUaCGgCUCGCGGUguC-GCGGCUGu -5'
18570 5' -59.7 NC_004682.1 + 33121 0.69 0.290891
Target:  5'- aCCAgGCCGGGgaucaucggcuggauCuGCUGCAGCGCCGugGu -3'
miRNA:   3'- -GGUaCGGCUC---------------G-CGGUGUCGCGGCugU- -5'
18570 5' -59.7 NC_004682.1 + 29050 0.68 0.33293
Target:  5'- gCAUGCCGAcCGCaCGgAGCGUCGGg- -3'
miRNA:   3'- gGUACGGCUcGCG-GUgUCGCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 16907 0.68 0.33293
Target:  5'- uCgGUGCCGgugucGGCGCUGUGGCGCuCGGCAu -3'
miRNA:   3'- -GgUACGGC-----UCGCGGUGUCGCG-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.