miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18570 5' -59.7 NC_004682.1 + 38026 0.85 0.02094
Target:  5'- uCgGUGCCGAgGUGCCuCAGCGCCGACAg -3'
miRNA:   3'- -GgUACGGCU-CGCGGuGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 46141 0.66 0.466112
Target:  5'- ---cGCCGAGCGacaGCAGCaCCGAg- -3'
miRNA:   3'- gguaCGGCUCGCgg-UGUCGcGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 45473 0.66 0.466112
Target:  5'- aCGUGCCauGCGCUGuCGGCGuuGAUg -3'
miRNA:   3'- gGUACGGcuCGCGGU-GUCGCggCUGu -5'
18570 5' -59.7 NC_004682.1 + 37243 0.66 0.437238
Target:  5'- uUCA-GCCGGauGcCGCCACGGUGgCCGugGg -3'
miRNA:   3'- -GGUaCGGCU--C-GCGGUGUCGC-GGCugU- -5'
18570 5' -59.7 NC_004682.1 + 14985 0.67 0.427843
Target:  5'- uCCAcGCCcacaaGGCGUCGguGCGCCGGg- -3'
miRNA:   3'- -GGUaCGGc----UCGCGGUguCGCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 26461 0.67 0.427843
Target:  5'- gUCGUGCCGAucuugcuccCGCCACGGgUGCCGuGCu -3'
miRNA:   3'- -GGUACGGCUc--------GCGGUGUC-GCGGC-UGu -5'
18570 5' -59.7 NC_004682.1 + 6351 0.67 0.391495
Target:  5'- uCCccGCCGAcacgGCGCgGgCGGUGCuCGACAa -3'
miRNA:   3'- -GGuaCGGCU----CGCGgU-GUCGCG-GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 8849 0.68 0.365589
Target:  5'- aCUAUGaguCCGAGCGCC--GGC-CCGACGc -3'
miRNA:   3'- -GGUAC---GGCUCGCGGugUCGcGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 16907 0.68 0.33293
Target:  5'- uCgGUGCCGgugucGGCGCUGUGGCGCuCGGCAu -3'
miRNA:   3'- -GgUACGGC-----UCGCGGUGUCGCG-GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 33566 0.7 0.281053
Target:  5'- cCCA-GCaGAGCGCCGuuGuCGCCGACc -3'
miRNA:   3'- -GGUaCGgCUCGCGGUguC-GCGGCUGu -5'
18570 5' -59.7 NC_004682.1 + 40610 0.73 0.155065
Target:  5'- gCCAUGC--AGUGCCGC-GUGCCGACGc -3'
miRNA:   3'- -GGUACGgcUCGCGGUGuCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 4383 0.72 0.186768
Target:  5'- gCCGccGCCacGGGCGCggagCGCGGUGCCGACAa -3'
miRNA:   3'- -GGUa-CGG--CUCGCG----GUGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 28690 0.72 0.207349
Target:  5'- gCGUGCCGAuGcCGCCcacucGCGGCGgCGGCGg -3'
miRNA:   3'- gGUACGGCU-C-GCGG-----UGUCGCgGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 40257 0.71 0.241872
Target:  5'- cCCAgugcGUCGAGCGCuCGCAGCG-UGACc -3'
miRNA:   3'- -GGUa---CGGCUCGCG-GUGUCGCgGCUGu -5'
18570 5' -59.7 NC_004682.1 + 12876 0.7 0.248071
Target:  5'- aCAUGCCGuaCGCaACGGCGuCCGACGu -3'
miRNA:   3'- gGUACGGCucGCGgUGUCGC-GGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 39332 0.7 0.260864
Target:  5'- uCCGcuUGCCGuuGGCGCgGCGGCaGCCGuaGCAc -3'
miRNA:   3'- -GGU--ACGGC--UCGCGgUGUCG-CGGC--UGU- -5'
18570 5' -59.7 NC_004682.1 + 33922 0.98 0.002102
Target:  5'- uCCAUGCCGAG-GCCACAGCGCCGACAc -3'
miRNA:   3'- -GGUACGGCUCgCGGUGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 4501 0.66 0.475956
Target:  5'- cCCGgcggGCuCGGG-GCCGCAcGCGCuuCGACAg -3'
miRNA:   3'- -GGUa---CG-GCUCgCGGUGU-CGCG--GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 19824 0.66 0.456376
Target:  5'- uCCAggucGCCGAgGCGCUgauGCGCCGGg- -3'
miRNA:   3'- -GGUa---CGGCU-CGCGGuguCGCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 49374 0.66 0.455408
Target:  5'- gCC-UGCCGGGaaguugacgggcuCGCCGCuGGCGUCGAg- -3'
miRNA:   3'- -GGuACGGCUC-------------GCGGUG-UCGCGGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.