miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18570 5' -59.7 NC_004682.1 + 4383 0.72 0.186768
Target:  5'- gCCGccGCCacGGGCGCggagCGCGGUGCCGACAa -3'
miRNA:   3'- -GGUa-CGG--CUCGCG----GUGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 4501 0.66 0.475956
Target:  5'- cCCGgcggGCuCGGG-GCCGCAcGCGCuuCGACAg -3'
miRNA:   3'- -GGUa---CG-GCUCgCGGUGU-CGCG--GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 5346 0.66 0.453476
Target:  5'- aCAUcGCUGAGCacggaggcaucaacGCCgACAGCGCaUGGCAc -3'
miRNA:   3'- gGUA-CGGCUCG--------------CGG-UGUCGCG-GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 6351 0.67 0.391495
Target:  5'- uCCccGCCGAcacgGCGCgGgCGGUGCuCGACAa -3'
miRNA:   3'- -GGuaCGGCU----CGCGgU-GUCGCG-GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 7297 0.68 0.34089
Target:  5'- aCCGUGCUGAGgG--ACAGCGaCGGCAa -3'
miRNA:   3'- -GGUACGGCUCgCggUGUCGCgGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 7697 0.67 0.418569
Target:  5'- aCCGccugGaCCgGAGCGUgGCGGCuGCCGACc -3'
miRNA:   3'- -GGUa---C-GG-CUCGCGgUGUCG-CGGCUGu -5'
18570 5' -59.7 NC_004682.1 + 7743 0.71 0.235802
Target:  5'- aCCGcaagGCCGuacGCG-CACAGCGUCGGCGu -3'
miRNA:   3'- -GGUa---CGGCu--CGCgGUGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 8849 0.68 0.365589
Target:  5'- aCUAUGaguCCGAGCGCC--GGC-CCGACGc -3'
miRNA:   3'- -GGUAC---GGCUCGCGGugUCGcGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 11485 0.67 0.391495
Target:  5'- uCCAaggagGCCG-GUGCUACGGCuGCCGcCGc -3'
miRNA:   3'- -GGUa----CGGCuCGCGGUGUCG-CGGCuGU- -5'
18570 5' -59.7 NC_004682.1 + 12876 0.7 0.248071
Target:  5'- aCAUGCCGuaCGCaACGGCGuCCGACGu -3'
miRNA:   3'- gGUACGGCucGCGgUGUCGC-GGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 14985 0.67 0.427843
Target:  5'- uCCAcGCCcacaaGGCGUCGguGCGCCGGg- -3'
miRNA:   3'- -GGUaCGGc----UCGCGGUguCGCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 16907 0.68 0.33293
Target:  5'- uCgGUGCCGgugucGGCGCUGUGGCGCuCGGCAu -3'
miRNA:   3'- -GgUACGGC-----UCGCGGUGUCGCG-GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 18070 0.66 0.44675
Target:  5'- uCCAgcacGCC-AGCGCCGaGGCGUaCGACGa -3'
miRNA:   3'- -GGUa---CGGcUCGCGGUgUCGCG-GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 19824 0.66 0.456376
Target:  5'- uCCAggucGCCGAgGCGCUgauGCGCCGGg- -3'
miRNA:   3'- -GGUa---CGGCU-CGCGGuguCGCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 20454 0.73 0.177168
Target:  5'- gCAgcgGCUGAGCGCCAagcucCAGCGCgaGGCGa -3'
miRNA:   3'- gGUa--CGGCUCGCGGU-----GUCGCGg-CUGU- -5'
18570 5' -59.7 NC_004682.1 + 23275 0.72 0.206812
Target:  5'- aCCAgcggcucUGCCGcAGCGCCAguGuCGCCGcCGu -3'
miRNA:   3'- -GGU-------ACGGC-UCGCGGUguC-GCGGCuGU- -5'
18570 5' -59.7 NC_004682.1 + 23400 0.73 0.155065
Target:  5'- gCCGUGaacgacagCGAGaaCGCCAguGCGCCGACGg -3'
miRNA:   3'- -GGUACg-------GCUC--GCGGUguCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 25198 0.7 0.260864
Target:  5'- cCCA-GUgGAGCGCCcggACAGCGCuacuuCGACGg -3'
miRNA:   3'- -GGUaCGgCUCGCGG---UGUCGCG-----GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 25607 0.77 0.082444
Target:  5'- aCCuUGCCGGucuccggcucGCGCCguACGGUGCCGACAg -3'
miRNA:   3'- -GGuACGGCU----------CGCGG--UGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 26461 0.67 0.427843
Target:  5'- gUCGUGCCGAucuugcuccCGCCACGGgUGCCGuGCu -3'
miRNA:   3'- -GGUACGGCUc--------GCGGUGUC-GCGGC-UGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.