Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18571 | 5' | -59.6 | NC_004682.1 | + | 1564 | 0.71 | 0.226808 |
Target: 5'- gGUCCUGgUCGAAGACa-UGGAGACgGg -3' miRNA: 3'- -CGGGACgAGCUUCUGggGCCUCUGgC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 1845 | 0.68 | 0.350872 |
Target: 5'- gGCgUCUGCUCGGGcuCCCCGGccccaucGGGCCGc -3' miRNA: 3'- -CG-GGACGAGCUUcuGGGGCC-------UCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 1883 | 0.7 | 0.26302 |
Target: 5'- gGCCCUGCgggCGAgGGACUCCacaucgacggccaGGuGGCCGa -3' miRNA: 3'- -CGGGACGa--GCU-UCUGGGG-------------CCuCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 4571 | 0.68 | 0.351685 |
Target: 5'- gGCCCUGCggccacccaggUCGugcucaacucgcGAGGCaucaucguCCCGGAGGCCa -3' miRNA: 3'- -CGGGACG-----------AGC------------UUCUG--------GGGCCUCUGGc -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 8962 | 0.68 | 0.367397 |
Target: 5'- cGCCaggaGCUUGAGGGCUUCGGcucggcgGGGCCGa -3' miRNA: 3'- -CGGga--CGAGCUUCUGGGGCC-------UCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 12645 | 0.66 | 0.458614 |
Target: 5'- cGCgCUGUUCGAcguAGACgaaCUCGGcuGGACCGa -3' miRNA: 3'- -CGgGACGAGCU---UCUG---GGGCC--UCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 14339 | 0.66 | 0.47808 |
Target: 5'- cUCCgugcgGCUCuGGAGGCgCUGcGAGGCCGg -3' miRNA: 3'- cGGGa----CGAG-CUUCUGgGGC-CUCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 15407 | 0.66 | 0.458614 |
Target: 5'- cGUCCUGUcgaCGGAguacGACCCCGacuGGGCCGg -3' miRNA: 3'- -CGGGACGa--GCUU----CUGGGGCc--UCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 15443 | 0.66 | 0.508013 |
Target: 5'- uGCCUUcGUcaUCGAGGACuCCCGcGAGgGCUGg -3' miRNA: 3'- -CGGGA-CG--AGCUUCUG-GGGC-CUC-UGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 17110 | 0.66 | 0.468295 |
Target: 5'- gGCCCcGaa-GAAGGCCCCGGccaAGGCgGc -3' miRNA: 3'- -CGGGaCgagCUUCUGGGGCC---UCUGgC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 17418 | 0.67 | 0.449041 |
Target: 5'- cGCCCcaggcgGCUCaGGAGGCCCCcaacggGGAGAagCGc -3' miRNA: 3'- -CGGGa-----CGAG-CUUCUGGGG------CCUCUg-GC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 22834 | 0.67 | 0.430232 |
Target: 5'- gGCCCgGaa-GAAGGUCCCGGAGcCCGc -3' miRNA: 3'- -CGGGaCgagCUUCUGGGGCCUCuGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 24930 | 0.69 | 0.305254 |
Target: 5'- cGCCgUGCgucUGGcuGGGuCCCCaGGAGACCGa -3' miRNA: 3'- -CGGgACGa--GCU--UCU-GGGG-CCUCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 25016 | 0.66 | 0.468295 |
Target: 5'- gGCaUCUGCUCGcauccagggcGAGGCCaacgguCUGGAGACCu -3' miRNA: 3'- -CG-GGACGAGC----------UUCUGG------GGCCUCUGGc -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 25691 | 0.67 | 0.439579 |
Target: 5'- -aCCUGUUCGGuGGACaCCUGGucACCGa -3' miRNA: 3'- cgGGACGAGCU-UCUG-GGGCCucUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 25767 | 0.66 | 0.487964 |
Target: 5'- cCCCUGgUgUGAacagucGGACCUCGGGGuCCGg -3' miRNA: 3'- cGGGACgA-GCU------UCUGGGGCCUCuGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 27172 | 0.73 | 0.179771 |
Target: 5'- gGCCCUGCUCGgcGACCCacuucgcGCCGg -3' miRNA: 3'- -CGGGACGAGCuuCUGGGgccuc--UGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 31190 | 0.66 | 0.508013 |
Target: 5'- aGCUUgUGCUCGuagggcaccAGAUCCUGcGAGACCGc -3' miRNA: 3'- -CGGG-ACGAGCu--------UCUGGGGC-CUCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 33839 | 1.09 | 0.00039 |
Target: 5'- gGCCCUGCUCGAAGACCCCGGAGACCGc -3' miRNA: 3'- -CGGGACGAGCUUCUGGGGCCUCUGGC- -5' |
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18571 | 5' | -59.6 | NC_004682.1 | + | 37242 | 0.66 | 0.457652 |
Target: 5'- cGCCgUGCUCGgcGuCCCaGGAGcgcgggaACCGc -3' miRNA: 3'- -CGGgACGAGCuuCuGGGgCCUC-------UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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