miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18571 5' -59.6 NC_004682.1 + 33839 1.09 0.00039
Target:  5'- gGCCCUGCUCGAAGACCCCGGAGACCGc -3'
miRNA:   3'- -CGGGACGAGCUUCUGGGGCCUCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 50377 0.78 0.084033
Target:  5'- gGCCCUggaggccGCUgGAuaccGGCCCUGGAGGCCGg -3'
miRNA:   3'- -CGGGA-------CGAgCUu---CUGGGGCCUCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 42945 0.77 0.099449
Target:  5'- cCUCUGCgaGggGAUCUCGGAGACCGg -3'
miRNA:   3'- cGGGACGagCuuCUGGGGCCUCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 27172 0.73 0.179771
Target:  5'- gGCCCUGCUCGgcGACCCacuucgcGCCGg -3'
miRNA:   3'- -CGGGACGAGCuuCUGGGgccuc--UGGC- -5'
18571 5' -59.6 NC_004682.1 + 48535 0.72 0.215526
Target:  5'- cGCCCUucgGCcCGGacGGACCuuGGGGGCCu -3'
miRNA:   3'- -CGGGA---CGaGCU--UCUGGggCCUCUGGc -5'
18571 5' -59.6 NC_004682.1 + 1564 0.71 0.226808
Target:  5'- gGUCCUGgUCGAAGACa-UGGAGACgGg -3'
miRNA:   3'- -CGGGACgAGCUUCUGggGCCUCUGgC- -5'
18571 5' -59.6 NC_004682.1 + 46766 0.71 0.257206
Target:  5'- -aCCUGCagcCGgcGGCUuuGGAGACCGc -3'
miRNA:   3'- cgGGACGa--GCuuCUGGggCCUCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 1883 0.7 0.26302
Target:  5'- gGCCCUGCgggCGAgGGACUCCacaucgacggccaGGuGGCCGa -3'
miRNA:   3'- -CGGGACGa--GCU-UCUGGGG-------------CCuCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 48770 0.7 0.263672
Target:  5'- aCCCUGCgggcCGGucGGACCCUGcGGACCa -3'
miRNA:   3'- cGGGACGa---GCU--UCUGGGGCcUCUGGc -5'
18571 5' -59.6 NC_004682.1 + 24930 0.69 0.305254
Target:  5'- cGCCgUGCgucUGGcuGGGuCCCCaGGAGACCGa -3'
miRNA:   3'- -CGGgACGa--GCU--UCU-GGGG-CCUCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 1845 0.68 0.350872
Target:  5'- gGCgUCUGCUCGGGcuCCCCGGccccaucGGGCCGc -3'
miRNA:   3'- -CG-GGACGAGCUUcuGGGGCC-------UCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 4571 0.68 0.351685
Target:  5'- gGCCCUGCggccacccaggUCGugcucaacucgcGAGGCaucaucguCCCGGAGGCCa -3'
miRNA:   3'- -CGGGACG-----------AGC------------UUCUG--------GGGCCUCUGGc -5'
18571 5' -59.6 NC_004682.1 + 8962 0.68 0.367397
Target:  5'- cGCCaggaGCUUGAGGGCUUCGGcucggcgGGGCCGa -3'
miRNA:   3'- -CGGga--CGAGCUUCUGGGGCC-------UCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 40002 0.68 0.376711
Target:  5'- aGCgUCUGCgCGAggccgAGGCCCuCGGuGGCCGa -3'
miRNA:   3'- -CG-GGACGaGCU-----UCUGGG-GCCuCUGGC- -5'
18571 5' -59.6 NC_004682.1 + 47604 0.68 0.376711
Target:  5'- cGCgCUGg-CGAccGGCCUCGGAGACCu -3'
miRNA:   3'- -CGgGACgaGCUu-CUGGGGCCUCUGGc -5'
18571 5' -59.6 NC_004682.1 + 22834 0.67 0.430232
Target:  5'- gGCCCgGaa-GAAGGUCCCGGAGcCCGc -3'
miRNA:   3'- -CGGGaCgagCUUCUGGGGCCUCuGGC- -5'
18571 5' -59.6 NC_004682.1 + 25691 0.67 0.439579
Target:  5'- -aCCUGUUCGGuGGACaCCUGGucACCGa -3'
miRNA:   3'- cgGGACGAGCU-UCUG-GGGCCucUGGC- -5'
18571 5' -59.6 NC_004682.1 + 17418 0.67 0.449041
Target:  5'- cGCCCcaggcgGCUCaGGAGGCCCCcaacggGGAGAagCGc -3'
miRNA:   3'- -CGGGa-----CGAG-CUUCUGGGG------CCUCUg-GC- -5'
18571 5' -59.6 NC_004682.1 + 39164 0.67 0.449041
Target:  5'- gGCUCUGCUCG-GGAgUCaGGAaGGCCGa -3'
miRNA:   3'- -CGGGACGAGCuUCUgGGgCCU-CUGGC- -5'
18571 5' -59.6 NC_004682.1 + 37242 0.66 0.457652
Target:  5'- cGCCgUGCUCGgcGuCCCaGGAGcgcgggaACCGc -3'
miRNA:   3'- -CGGgACGAGCuuCuGGGgCCUC-------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.