miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18580 3' -62.7 NC_004682.1 + 1535 0.71 0.149206
Target:  5'- -aGCGUcaacgCACGCGGCGACgUGCugCGGg -3'
miRNA:   3'- gaCGCG-----GUGCGCCGCUG-GCGugGCUa -5'
18580 3' -62.7 NC_004682.1 + 2957 0.67 0.289432
Target:  5'- uCUGgGgCGCG-GGCGGCgGCGCUGGg -3'
miRNA:   3'- -GACgCgGUGCgCCGCUGgCGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 3879 0.7 0.165829
Target:  5'- gCUGCGCCACGCGGagGAugUCGUgggcacGCCGGa -3'
miRNA:   3'- -GACGCGGUGCGCCg-CU--GGCG------UGGCUa -5'
18580 3' -62.7 NC_004682.1 + 5034 0.7 0.164959
Target:  5'- gUGCGCCACGCugaucccgccgaagGGCuacgcguacgccgacGCCGCACCGGc -3'
miRNA:   3'- gACGCGGUGCG--------------CCGc--------------UGGCGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 6145 0.67 0.27571
Target:  5'- -gGCG-UACGaCGGCgGGCCGCugCGAg -3'
miRNA:   3'- gaCGCgGUGC-GCCG-CUGGCGugGCUa -5'
18580 3' -62.7 NC_004682.1 + 6274 0.67 0.289432
Target:  5'- uCUGgGCCugGaGGCGGCgaaGCGCUGGc -3'
miRNA:   3'- -GACgCGGugCgCCGCUGg--CGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 7698 0.67 0.289433
Target:  5'- --cCGCCuggaccggaGCGUGGCGGCUGCcgACCGAc -3'
miRNA:   3'- gacGCGG---------UGCGCCGCUGGCG--UGGCUa -5'
18580 3' -62.7 NC_004682.1 + 9401 0.71 0.137749
Target:  5'- -aGCGCCuGCGUGGuCGGCCuGCACCa-- -3'
miRNA:   3'- gaCGCGG-UGCGCC-GCUGG-CGUGGcua -5'
18580 3' -62.7 NC_004682.1 + 10487 0.71 0.153214
Target:  5'- -aGCgagGCUuCGCGGUGACCGCGCuCGAc -3'
miRNA:   3'- gaCG---CGGuGCGCCGCUGGCGUG-GCUa -5'
18580 3' -62.7 NC_004682.1 + 14709 0.68 0.231769
Target:  5'- --aCGUCGCGUGGCGACaUGC-CCGAg -3'
miRNA:   3'- gacGCGGUGCGCCGCUG-GCGuGGCUa -5'
18580 3' -62.7 NC_004682.1 + 14916 0.66 0.303685
Target:  5'- gCUGCGa---GCGGCGACCcgACCGAg -3'
miRNA:   3'- -GACGCggugCGCCGCUGGcgUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 15091 0.67 0.269047
Target:  5'- -aGCGCUAUcaccucccCGGUGAgCGCGCCGAUc -3'
miRNA:   3'- gaCGCGGUGc-------GCCGCUgGCGUGGCUA- -5'
18580 3' -62.7 NC_004682.1 + 15719 0.7 0.184095
Target:  5'- -cGCGCaguGCGUGGUGGCCggcgguguGCGCCGGUc -3'
miRNA:   3'- gaCGCGg--UGCGCCGCUGG--------CGUGGCUA- -5'
18580 3' -62.7 NC_004682.1 + 16060 0.67 0.25611
Target:  5'- cCUGgGCCACgucaaccugGCGGCGuuCGCGCaCGGc -3'
miRNA:   3'- -GACgCGGUG---------CGCCGCugGCGUG-GCUa -5'
18580 3' -62.7 NC_004682.1 + 16320 0.67 0.289432
Target:  5'- cCUGCuCCGCGaCGGCaugaaggacuggGGCCGCGCCc-- -3'
miRNA:   3'- -GACGcGGUGC-GCCG------------CUGGCGUGGcua -5'
18580 3' -62.7 NC_004682.1 + 16659 0.69 0.204115
Target:  5'- -gGCGCUGCGCGGCaugcgcucgGGCgGCAgCGGUg -3'
miRNA:   3'- gaCGCGGUGCGCCG---------CUGgCGUgGCUA- -5'
18580 3' -62.7 NC_004682.1 + 16828 0.72 0.127105
Target:  5'- -gGCGUCuuCGUGGCGGCUGCACCc-- -3'
miRNA:   3'- gaCGCGGu-GCGCCGCUGGCGUGGcua -5'
18580 3' -62.7 NC_004682.1 + 18023 0.7 0.165829
Target:  5'- -cGCGCCgggACGCGGCuacuuCCGCGCCa-- -3'
miRNA:   3'- gaCGCGG---UGCGCCGcu---GGCGUGGcua -5'
18580 3' -62.7 NC_004682.1 + 20199 0.66 0.311011
Target:  5'- cCUG-GCCGCGCugucgGGCGACCGgA-CGAUg -3'
miRNA:   3'- -GACgCGGUGCG-----CCGCUGGCgUgGCUA- -5'
18580 3' -62.7 NC_004682.1 + 23425 0.69 0.193879
Target:  5'- gUGCGCCGa-CGGCGAUUGUGCCGc- -3'
miRNA:   3'- gACGCGGUgcGCCGCUGGCGUGGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.