miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18580 3' -62.7 NC_004682.1 + 16828 0.72 0.127105
Target:  5'- -gGCGUCuuCGUGGCGGCUGCACCc-- -3'
miRNA:   3'- gaCGCGGu-GCGCCGCUGGCGUGGcua -5'
18580 3' -62.7 NC_004682.1 + 46130 0.66 0.341651
Target:  5'- -cGCGUCggcaGCGcCGaGCGACagcaGCACCGAg -3'
miRNA:   3'- gaCGCGG----UGC-GC-CGCUGg---CGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 32639 0.66 0.341651
Target:  5'- -aGCGCCauGCGCGGUGGuuGCcggugacgaccAUCGGUg -3'
miRNA:   3'- gaCGCGG--UGCGCCGCUggCG-----------UGGCUA- -5'
18580 3' -62.7 NC_004682.1 + 27546 0.66 0.341651
Target:  5'- -aGuCGCUACgGCGGCGACacuggCGCugCGGc -3'
miRNA:   3'- gaC-GCGGUG-CGCCGCUG-----GCGugGCUa -5'
18580 3' -62.7 NC_004682.1 + 28698 0.66 0.31847
Target:  5'- aUGcCGCCcacuCGCGGCGGCgGCGggaCGAa -3'
miRNA:   3'- gAC-GCGGu---GCGCCGCUGgCGUg--GCUa -5'
18580 3' -62.7 NC_004682.1 + 14916 0.66 0.303685
Target:  5'- gCUGCGa---GCGGCGACCcgACCGAg -3'
miRNA:   3'- -GACGCggugCGCCGCUGGcgUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 16320 0.67 0.289432
Target:  5'- cCUGCuCCGCGaCGGCaugaaggacuggGGCCGCGCCc-- -3'
miRNA:   3'- -GACGcGGUGC-GCCG------------CUGGCGUGGcua -5'
18580 3' -62.7 NC_004682.1 + 6274 0.67 0.289432
Target:  5'- uCUGgGCCugGaGGCGGCgaaGCGCUGGc -3'
miRNA:   3'- -GACgCGGugCgCCGCUGg--CGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 2957 0.67 0.289432
Target:  5'- uCUGgGgCGCG-GGCGGCgGCGCUGGg -3'
miRNA:   3'- -GACgCgGUGCgCCGCUGgCGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 45517 0.67 0.27571
Target:  5'- gUGCGCCGCacuGCGGUguucacaaguugGACCcgccuGCGCCGGg -3'
miRNA:   3'- gACGCGGUG---CGCCG------------CUGG-----CGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 5034 0.7 0.164959
Target:  5'- gUGCGCCACGCugaucccgccgaagGGCuacgcguacgccgacGCCGCACCGGc -3'
miRNA:   3'- gACGCGGUGCG--------------CCGc--------------UGGCGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 34612 0.69 0.193879
Target:  5'- -cGaCGCCACGCcgaGGUGGCCcaCGCCGAUg -3'
miRNA:   3'- gaC-GCGGUGCG---CCGCUGGc-GUGGCUA- -5'
18580 3' -62.7 NC_004682.1 + 42768 0.69 0.19894
Target:  5'- -cGUGCCACGCGGgcaGACCGgGCuuCGGUc -3'
miRNA:   3'- gaCGCGGUGCGCCg--CUGGCgUG--GCUA- -5'
18580 3' -62.7 NC_004682.1 + 16659 0.69 0.204115
Target:  5'- -gGCGCUGCGCGGCaugcgcucgGGCgGCAgCGGUg -3'
miRNA:   3'- gaCGCGGUGCGCCG---------CUGgCGUgGCUA- -5'
18580 3' -62.7 NC_004682.1 + 39334 0.69 0.214817
Target:  5'- -cGCuuGCCguugGCGCGGCGGCagccguaGCACCGGc -3'
miRNA:   3'- gaCG--CGG----UGCGCCGCUGg------CGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 14709 0.68 0.231769
Target:  5'- --aCGUCGCGUGGCGACaUGC-CCGAg -3'
miRNA:   3'- gacGCGGUGCGCCGCUG-GCGuGGCUa -5'
18580 3' -62.7 NC_004682.1 + 6145 0.67 0.27571
Target:  5'- -gGCG-UACGaCGGCgGGCCGCugCGAg -3'
miRNA:   3'- gaCGCgGUGC-GCCG-CUGGCGugGCUa -5'
18580 3' -62.7 NC_004682.1 + 27732 1.06 0.000286
Target:  5'- aCUGCGCCACGCGGCGACCGCACCGAUg -3'
miRNA:   3'- -GACGCGGUGCGCCGCUGGCGUGGCUA- -5'
18580 3' -62.7 NC_004682.1 + 42181 0.66 0.333791
Target:  5'- -cGCGCCgaACGCGaG-GACCGCGCaGAc -3'
miRNA:   3'- gaCGCGG--UGCGC-CgCUGGCGUGgCUa -5'
18580 3' -62.7 NC_004682.1 + 49902 0.66 0.318471
Target:  5'- -gGUGCCGaugGCGGUGACCuucucgguggGCACCGc- -3'
miRNA:   3'- gaCGCGGUg--CGCCGCUGG----------CGUGGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.