miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18580 5' -53.8 NC_004682.1 + 36833 0.65 0.833515
Target:  5'- aGGUCGUCAGccucGAUgaccccaggccacUGCG-AGGCGACg -3'
miRNA:   3'- cCUAGCAGUC----CUA-------------GCGCaUCCGCUGg -5'
18580 5' -53.8 NC_004682.1 + 40161 0.66 0.829032
Target:  5'- aGGAUCGccgcCAGGAcacgcucCGgGUAgcgaggugcgaucucGGCGACCa -3'
miRNA:   3'- -CCUAGCa---GUCCUa------GCgCAU---------------CCGCUGG- -5'
18580 5' -53.8 NC_004682.1 + 18225 0.66 0.825409
Target:  5'- uGAUCG-CAGGGuUCGCccgAGGCaucgaGGCCg -3'
miRNA:   3'- cCUAGCaGUCCU-AGCGca-UCCG-----CUGG- -5'
18580 5' -53.8 NC_004682.1 + 42415 0.66 0.825409
Target:  5'- cGGGUUGcCgGGGGUCGCGU---UGACCu -3'
miRNA:   3'- -CCUAGCaG-UCCUAGCGCAuccGCUGG- -5'
18580 5' -53.8 NC_004682.1 + 41746 0.66 0.81621
Target:  5'- ----gGUCAGGAUCGaca--GCGACCg -3'
miRNA:   3'- ccuagCAGUCCUAGCgcaucCGCUGG- -5'
18580 5' -53.8 NC_004682.1 + 30866 0.66 0.81621
Target:  5'- ---cCGUCGcGGcaGUCGCGUugcGGGCGAUg -3'
miRNA:   3'- ccuaGCAGU-CC--UAGCGCA---UCCGCUGg -5'
18580 5' -53.8 NC_004682.1 + 46559 0.66 0.797245
Target:  5'- uGAUCGgCAGaagCGCcUGGGCGAUCa -3'
miRNA:   3'- cCUAGCaGUCcuaGCGcAUCCGCUGG- -5'
18580 5' -53.8 NC_004682.1 + 16206 0.66 0.7875
Target:  5'- uGGAUCGcaacCGGcGcAUCgGCGUGGGCcACCu -3'
miRNA:   3'- -CCUAGCa---GUC-C-UAG-CGCAUCCGcUGG- -5'
18580 5' -53.8 NC_004682.1 + 43070 0.66 0.7875
Target:  5'- cGGuGUCGUUgccgGGGAUgugCGCGUugcagaucgccAGGCGACg -3'
miRNA:   3'- -CC-UAGCAG----UCCUA---GCGCA-----------UCCGCUGg -5'
18580 5' -53.8 NC_004682.1 + 35820 0.67 0.757341
Target:  5'- -aGUCGUCcguagggagcuGGAUCGCGUcgucccGGCGcACCg -3'
miRNA:   3'- ccUAGCAGu----------CCUAGCGCAu-----CCGC-UGG- -5'
18580 5' -53.8 NC_004682.1 + 30192 0.68 0.70468
Target:  5'- aGGAucUCGUCGuGGAUCG-GcAGGCGAa- -3'
miRNA:   3'- -CCU--AGCAGU-CCUAGCgCaUCCGCUgg -5'
18580 5' -53.8 NC_004682.1 + 31468 0.68 0.693891
Target:  5'- gGGGUCcaccagguggGcCAGGAucuUCGUGUcGGUGACCu -3'
miRNA:   3'- -CCUAG----------CaGUCCU---AGCGCAuCCGCUGG- -5'
18580 5' -53.8 NC_004682.1 + 46090 0.68 0.683042
Target:  5'- cGGAucguUCGUCAGGuagaccgaCGUGUAGcGCG-CCu -3'
miRNA:   3'- -CCU----AGCAGUCCua------GCGCAUC-CGCuGG- -5'
18580 5' -53.8 NC_004682.1 + 48647 0.68 0.683042
Target:  5'- cGAagGUCuGG-UCGaCGUAGGCGAUg -3'
miRNA:   3'- cCUagCAGuCCuAGC-GCAUCCGCUGg -5'
18580 5' -53.8 NC_004682.1 + 38044 0.69 0.66121
Target:  5'- cGGcGUCGggGGGAUCGCuUGGGggaGGCCg -3'
miRNA:   3'- -CC-UAGCagUCCUAGCGcAUCCg--CUGG- -5'
18580 5' -53.8 NC_004682.1 + 23696 0.69 0.650249
Target:  5'- uGGcuggCGUCGaccuucGGGUCGCu--GGCGACCg -3'
miRNA:   3'- -CCua--GCAGU------CCUAGCGcauCCGCUGG- -5'
18580 5' -53.8 NC_004682.1 + 42836 0.7 0.59539
Target:  5'- aGGAUCGacaUCAGGAUCuCGUcgaccGGCaGCCa -3'
miRNA:   3'- -CCUAGC---AGUCCUAGcGCAu----CCGcUGG- -5'
18580 5' -53.8 NC_004682.1 + 3159 0.7 0.59539
Target:  5'- aGGcUCuGUCGGGAUCGCGgaaGGGCa--- -3'
miRNA:   3'- -CCuAG-CAGUCCUAGCGCa--UCCGcugg -5'
18580 5' -53.8 NC_004682.1 + 9129 0.71 0.509613
Target:  5'- uGGAgaagUCGgcCAGGGcggUGCGUgaGGGCGACCu -3'
miRNA:   3'- -CCU----AGCa-GUCCUa--GCGCA--UCCGCUGG- -5'
18580 5' -53.8 NC_004682.1 + 18124 0.71 0.499224
Target:  5'- gGGcgCGUCGGacAUCGCGgccaAGGCGGCa -3'
miRNA:   3'- -CCuaGCAGUCc-UAGCGCa---UCCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.