miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18584 3' -60.2 NC_004682.1 + 27057 0.66 0.449681
Target:  5'- aGGAUgUCCCACUCgcccuccaguucUgGGCUuaGCCAGgGg -3'
miRNA:   3'- -CCUGgAGGGUGAG------------AgUCGG--CGGUCgC- -5'
18584 3' -60.2 NC_004682.1 + 18052 0.66 0.44018
Target:  5'- aGGAgCUUCUCGaagagaUC-CAGCaCGCCAGCGc -3'
miRNA:   3'- -CCU-GGAGGGUg-----AGaGUCG-GCGGUCGC- -5'
18584 3' -60.2 NC_004682.1 + 14887 0.66 0.44018
Target:  5'- cGACCacgCCUgguguguucgGCgUCUCGGCUGCgAGCGg -3'
miRNA:   3'- cCUGGa--GGG----------UG-AGAGUCGGCGgUCGC- -5'
18584 3' -60.2 NC_004682.1 + 42312 0.66 0.44018
Target:  5'- cGGACCUUCCuCggugCGGUagaGCCAGCu -3'
miRNA:   3'- -CCUGGAGGGuGaga-GUCGg--CGGUCGc -5'
18584 3' -60.2 NC_004682.1 + 35621 0.66 0.44018
Target:  5'- aGGGCUUCUCGgUC-CAGCCcgagacCCAGCa -3'
miRNA:   3'- -CCUGGAGGGUgAGaGUCGGc-----GGUCGc -5'
18584 3' -60.2 NC_004682.1 + 328 0.66 0.44018
Target:  5'- gGGGCCUCnCCcugGCUCggCccuccgaggAGCCGCCcccaAGCGg -3'
miRNA:   3'- -CCUGGAG-GG---UGAGa-G---------UCGGCGG----UCGC- -5'
18584 3' -60.2 NC_004682.1 + 12789 0.66 0.430793
Target:  5'- uGGACCgaCCCACUgaaCGcGCUGUCGGCGc -3'
miRNA:   3'- -CCUGGa-GGGUGAga-GU-CGGCGGUCGC- -5'
18584 3' -60.2 NC_004682.1 + 40895 0.66 0.430793
Target:  5'- cGGGCgaCCCAgUCgCGGCUGCC-GUGa -3'
miRNA:   3'- -CCUGgaGGGUgAGaGUCGGCGGuCGC- -5'
18584 3' -60.2 NC_004682.1 + 43121 0.66 0.421526
Target:  5'- uGGuCCUUCUGgUCggucggCAGCCGCCAcGCu -3'
miRNA:   3'- -CCuGGAGGGUgAGa-----GUCGGCGGU-CGc -5'
18584 3' -60.2 NC_004682.1 + 47715 0.66 0.412379
Target:  5'- aGACCguguggCCCGCcuUCUUGGUCGCguGCa -3'
miRNA:   3'- cCUGGa-----GGGUG--AGAGUCGGCGguCGc -5'
18584 3' -60.2 NC_004682.1 + 49980 0.67 0.394459
Target:  5'- aGGGCCUcguucgCCCACUgUCaccuccugGGUgGUCAGCGg -3'
miRNA:   3'- -CCUGGA------GGGUGAgAG--------UCGgCGGUCGC- -5'
18584 3' -60.2 NC_004682.1 + 6262 0.67 0.368542
Target:  5'- cGACCUCCgGgCUCUgGGCCuggaGgCGGCGa -3'
miRNA:   3'- cCUGGAGGgU-GAGAgUCGG----CgGUCGC- -5'
18584 3' -60.2 NC_004682.1 + 1933 0.67 0.368542
Target:  5'- cGACCUaCCCAC-CUCGGUCcCCgauGGCGa -3'
miRNA:   3'- cCUGGA-GGGUGaGAGUCGGcGG---UCGC- -5'
18584 3' -60.2 NC_004682.1 + 41356 0.67 0.368542
Target:  5'- gGGACg-CCCaucaGCUCUgCAGUCGCCuGCa -3'
miRNA:   3'- -CCUGgaGGG----UGAGA-GUCGGCGGuCGc -5'
18584 3' -60.2 NC_004682.1 + 48853 0.67 0.366856
Target:  5'- gGGGCCaaCCGCcgUCguagcgguacagCAGaCCGCCAGCGa -3'
miRNA:   3'- -CCUGGagGGUG--AGa-----------GUC-GGCGGUCGC- -5'
18584 3' -60.2 NC_004682.1 + 3879 0.68 0.351925
Target:  5'- cGGACCcaugUCCgguguaggCACUUUCAGcCCGCUucGGCGg -3'
miRNA:   3'- -CCUGG----AGG--------GUGAGAGUC-GGCGG--UCGC- -5'
18584 3' -60.2 NC_004682.1 + 38011 0.68 0.343818
Target:  5'- gGGGCCUCUgcggGCuUCUgAGCCGCUcgcuGGCGg -3'
miRNA:   3'- -CCUGGAGGg---UG-AGAgUCGGCGG----UCGC- -5'
18584 3' -60.2 NC_004682.1 + 42569 0.68 0.32801
Target:  5'- gGGACCUcCCCGCUCUCguAGUCcUCGGgGu -3'
miRNA:   3'- -CCUGGA-GGGUGAGAG--UCGGcGGUCgC- -5'
18584 3' -60.2 NC_004682.1 + 21708 0.68 0.32801
Target:  5'- cGACCUCCCGcCUCUgGGCgGCaugauggacGCGg -3'
miRNA:   3'- cCUGGAGGGU-GAGAgUCGgCGgu-------CGC- -5'
18584 3' -60.2 NC_004682.1 + 46250 0.68 0.32031
Target:  5'- -cGCCUCguCCAUg-UCAGCuCGCCAGCGc -3'
miRNA:   3'- ccUGGAG--GGUGagAGUCG-GCGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.