miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18585 3' -59.4 NC_004682.1 + 45246 0.65 0.547819
Target:  5'- cGGGCGauCCGCucuucgaUGUGGUUGGcGCGuCCGg -3'
miRNA:   3'- -CCUGCauGGCG-------ACGCCAGCC-UGC-GGC- -5'
18585 3' -59.4 NC_004682.1 + 34582 0.66 0.538554
Target:  5'- cGACGgugacACCGCgaccaGCGGUCGcucgcauCGCCGc -3'
miRNA:   3'- cCUGCa----UGGCGa----CGCCAGCcu-----GCGGC- -5'
18585 3' -59.4 NC_004682.1 + 26024 0.66 0.528323
Target:  5'- cGGCGUcggacucccGCCGUagGCGGUCGauuGugGCCc -3'
miRNA:   3'- cCUGCA---------UGGCGa-CGCCAGC---CugCGGc -5'
18585 3' -59.4 NC_004682.1 + 47636 0.66 0.517154
Target:  5'- cGACGUaggugauGCCGUUGUGGacgCGGuuGCCc -3'
miRNA:   3'- cCUGCA-------UGGCGACGCCa--GCCugCGGc -5'
18585 3' -59.4 NC_004682.1 + 21486 0.66 0.498091
Target:  5'- aGGACGgcacagGCCGCUggaaggucuacGCGGUCc-ACGUCGg -3'
miRNA:   3'- -CCUGCa-----UGGCGA-----------CGCCAGccUGCGGC- -5'
18585 3' -59.4 NC_004682.1 + 31107 0.66 0.498091
Target:  5'- gGGAUGUACgGCUcaGCGGgcuccUCGGuggaGCCa -3'
miRNA:   3'- -CCUGCAUGgCGA--CGCC-----AGCCug--CGGc -5'
18585 3' -59.4 NC_004682.1 + 46315 0.67 0.488184
Target:  5'- uGGGCGUaGCCGUUGCuGUCGaaGCGCg- -3'
miRNA:   3'- -CCUGCA-UGGCGACGcCAGCc-UGCGgc -5'
18585 3' -59.4 NC_004682.1 + 13575 0.67 0.488184
Target:  5'- aGGuC-UACCGgaUGCGGUUcccgcgcuccugGGACGCCGa -3'
miRNA:   3'- -CCuGcAUGGCg-ACGCCAG------------CCUGCGGC- -5'
18585 3' -59.4 NC_004682.1 + 12486 0.67 0.478371
Target:  5'- gGGACGaGCCgggGCUGCaGUucgccaacaCGGugGCCa -3'
miRNA:   3'- -CCUGCaUGG---CGACGcCA---------GCCugCGGc -5'
18585 3' -59.4 NC_004682.1 + 22125 0.67 0.472531
Target:  5'- cGGCGUcaucuucgucccgccGCCGCcgcgaguggGCGGcaUCGGcACGCCGa -3'
miRNA:   3'- cCUGCA---------------UGGCGa--------CGCC--AGCC-UGCGGC- -5'
18585 3' -59.4 NC_004682.1 + 15593 0.67 0.468657
Target:  5'- cGGcACGgccucgggGCCGCUGCcguuGGcUCGGAUGuuGa -3'
miRNA:   3'- -CC-UGCa-------UGGCGACG----CC-AGCCUGCggC- -5'
18585 3' -59.4 NC_004682.1 + 38745 0.67 0.449537
Target:  5'- aGGCGUugCcCUGCGGacccGACGCCGu -3'
miRNA:   3'- cCUGCAugGcGACGCCagc-CUGCGGC- -5'
18585 3' -59.4 NC_004682.1 + 49784 0.68 0.403708
Target:  5'- cGGGCGUACUGC--CaGUCGGACGgCu -3'
miRNA:   3'- -CCUGCAUGGCGacGcCAGCCUGCgGc -5'
18585 3' -59.4 NC_004682.1 + 20194 0.68 0.394902
Target:  5'- -cGCGUccugGCCGC-GCuGUCGGGCGaCCGg -3'
miRNA:   3'- ccUGCA----UGGCGaCGcCAGCCUGC-GGC- -5'
18585 3' -59.4 NC_004682.1 + 30922 0.69 0.377668
Target:  5'- aGGACGaACgUGCcGCcGUCGGAuCGCCGa -3'
miRNA:   3'- -CCUGCaUG-GCGaCGcCAGCCU-GCGGC- -5'
18585 3' -59.4 NC_004682.1 + 30886 0.69 0.377668
Target:  5'- cGGGCGaugGCCGCUGUGGU--GuCGCCc -3'
miRNA:   3'- -CCUGCa--UGGCGACGCCAgcCuGCGGc -5'
18585 3' -59.4 NC_004682.1 + 17983 0.69 0.369242
Target:  5'- uGGGCGUccacgaACCGCcaGCGGUCaaGGaucugaucgacGCGCCGg -3'
miRNA:   3'- -CCUGCA------UGGCGa-CGCCAG--CC-----------UGCGGC- -5'
18585 3' -59.4 NC_004682.1 + 6151 0.69 0.344748
Target:  5'- cGACGgcggGCCGCUGCGaGUC-GACGgCu -3'
miRNA:   3'- cCUGCa---UGGCGACGC-CAGcCUGCgGc -5'
18585 3' -59.4 NC_004682.1 + 28098 0.69 0.336846
Target:  5'- cGGGCGUgGCUGCUcGCGG-CGGcgaGCGCgGa -3'
miRNA:   3'- -CCUGCA-UGGCGA-CGCCaGCC---UGCGgC- -5'
18585 3' -59.4 NC_004682.1 + 37940 0.69 0.336846
Target:  5'- uGACGUGCCcaacgggaUGUcacGUCGGACGCCGu -3'
miRNA:   3'- cCUGCAUGGcg------ACGc--CAGCCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.