Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18589 | 3' | -52.8 | NC_004682.1 | + | 42666 | 0.66 | 0.808982 |
Target: 5'- -----cGAUCaCGAUGUCUCGGCUg- -3' miRNA: 3'- aaguuuCUGGaGCUACAGAGCCGGug -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 46174 | 0.66 | 0.799068 |
Target: 5'- -----cGACCUCGAUGcacgucagcuUCUCGGCgAg -3' miRNA: 3'- aaguuuCUGGAGCUAC----------AGAGCCGgUg -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 4687 | 0.66 | 0.795049 |
Target: 5'- gUCGAAGccuugGCCUCGGUGcugcugucgcUCggcgcugccgacgCGGCCACg -3' miRNA: 3'- aAGUUUC-----UGGAGCUAC----------AGa------------GCCGGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 38882 | 0.67 | 0.757653 |
Target: 5'- -gCGAuGGCCUCGgcGaUCUUGGuCCGCa -3' miRNA: 3'- aaGUUuCUGGAGCuaC-AGAGCC-GGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 41329 | 0.67 | 0.754448 |
Target: 5'- cUCuGAGACC-CGGUGcagcgucaggaucaUCUCGGgCACa -3' miRNA: 3'- aAGuUUCUGGaGCUAC--------------AGAGCCgGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 14900 | 0.67 | 0.746922 |
Target: 5'- -----uGugUUCGgcGUCUCGGCUGCg -3' miRNA: 3'- aaguuuCugGAGCuaCAGAGCCGGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 9034 | 0.67 | 0.726199 |
Target: 5'- -cCAAcGACCUCGAcaucgagucgacgCUUGGCCACa -3' miRNA: 3'- aaGUUuCUGGAGCUaca----------GAGCCGGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 7256 | 0.67 | 0.725097 |
Target: 5'- -aCAucGACCUCGAcggaGUCUUGGuCCGg -3' miRNA: 3'- aaGUuuCUGGAGCUa---CAGAGCC-GGUg -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 25779 | 0.67 | 0.702874 |
Target: 5'- -aCAGucGGACCUCGggGUC-CGGCUu- -3' miRNA: 3'- aaGUU--UCUGGAGCuaCAGaGCCGGug -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 48686 | 0.67 | 0.702874 |
Target: 5'- cUUCGAGgaaccgugcGACCUCGAuguUGUCUCGauCCGCg -3' miRNA: 3'- -AAGUUU---------CUGGAGCU---ACAGAGCc-GGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 10715 | 0.67 | 0.702874 |
Target: 5'- -gCcuAGACCUCGAUGacgaCUCGGCaGCc -3' miRNA: 3'- aaGuuUCUGGAGCUACa---GAGCCGgUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 13962 | 0.68 | 0.691644 |
Target: 5'- cUCGAAGcGCCaaugCGAUGgccaucgagUUCGGCCACc -3' miRNA: 3'- aAGUUUC-UGGa---GCUACa--------GAGCCGGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 11718 | 0.68 | 0.680353 |
Target: 5'- aUCGAgaAGACCUCGAuUGUCcagCGGaUCGCc -3' miRNA: 3'- aAGUU--UCUGGAGCU-ACAGa--GCC-GGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 36967 | 0.68 | 0.657634 |
Target: 5'- -----cGGCCUCGGUggaucggaaccGUCUCGGCCu- -3' miRNA: 3'- aaguuuCUGGAGCUA-----------CAGAGCCGGug -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 48907 | 0.68 | 0.656495 |
Target: 5'- aUCGGGGACCgaggUGGguagGUCgucguagUCGGCCACc -3' miRNA: 3'- aAGUUUCUGGa---GCUa---CAG-------AGCCGGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 42370 | 0.68 | 0.646231 |
Target: 5'- gUCGAAGGCgaaUCGcuuUGUCU-GGCCGCg -3' miRNA: 3'- aAGUUUCUGg--AGCu--ACAGAgCCGGUG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 43434 | 0.69 | 0.610842 |
Target: 5'- aUCugcGGGGgCUCGAUgccguagGUCUCGGCCAg -3' miRNA: 3'- aAGu--UUCUgGAGCUA-------CAGAGCCGGUg -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 6598 | 0.7 | 0.563252 |
Target: 5'- -cCAGAGACCUagucgaugauccgaUGAUGUacUUCGGCCAa -3' miRNA: 3'- aaGUUUCUGGA--------------GCUACA--GAGCCGGUg -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 37297 | 0.7 | 0.555404 |
Target: 5'- cUCGAAGcCCUCGuUGUCcugcUCGGCC-Cg -3' miRNA: 3'- aAGUUUCuGGAGCuACAG----AGCCGGuG- -5' |
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18589 | 3' | -52.8 | NC_004682.1 | + | 28025 | 0.7 | 0.555404 |
Target: 5'- cUCAGAucaccuCCUUGAggaUCUCGGCCACg -3' miRNA: 3'- aAGUUUcu----GGAGCUac-AGAGCCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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