miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
186 5' -50.6 AC_000007.1 + 12605 1.14 0.000755
Target:  5'- cGUUACAACAGCGGCAACGUGCAGACCa -3'
miRNA:   3'- -CAAUGUUGUCGCCGUUGCACGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 16225 0.81 0.156235
Target:  5'- --gGCGGCGGUGGCGACGUGCuacgcGCCu -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCACGuc---UGG- -5'
186 5' -50.6 AC_000007.1 + 26741 0.8 0.170574
Target:  5'- --gGCGGCAGCGGCAGCG-GCAG-Ca -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCaCGUCuGg -5'
186 5' -50.6 AC_000007.1 + 17125 0.79 0.191518
Target:  5'- -gUGCGGCcaaucaagcaGGUGGCAccgggacuggGCGUGCAGACCg -3'
miRNA:   3'- caAUGUUG----------UCGCCGU----------UGCACGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 26285 0.78 0.239545
Target:  5'- --gGCGGCGGCGGCAGC-UGCAGcuucuuuuuggguGCCa -3'
miRNA:   3'- caaUGUUGUCGCCGUUGcACGUC-------------UGG- -5'
186 5' -50.6 AC_000007.1 + 15066 0.78 0.240213
Target:  5'- --aACAACAGUGGCAGCGgcGCGGAa- -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCa-CGUCUgg -5'
186 5' -50.6 AC_000007.1 + 13023 0.76 0.306878
Target:  5'- ----gGACAGUGGCAGCGUGUcccgGGACa -3'
miRNA:   3'- caaugUUGUCGCCGUUGCACG----UCUGg -5'
186 5' -50.6 AC_000007.1 + 2172 0.75 0.332045
Target:  5'- --gGCGGCGGCGGCGGCaggaGCAGAgCCc -3'
miRNA:   3'- caaUGUUGUCGCCGUUGca--CGUCU-GG- -5'
186 5' -50.6 AC_000007.1 + 11064 0.74 0.367906
Target:  5'- ---uCAGCAGCGGCAagagcaagagcaGCG-GCAGACa -3'
miRNA:   3'- caauGUUGUCGCCGU------------UGCaCGUCUGg -5'
186 5' -50.6 AC_000007.1 + 33280 0.74 0.39552
Target:  5'- --aGCGGCGGCGGCAgcaguuuauucgcGCGcugcUGCAGcACCa -3'
miRNA:   3'- caaUGUUGUCGCCGU-------------UGC----ACGUC-UGG- -5'
186 5' -50.6 AC_000007.1 + 26828 0.74 0.396496
Target:  5'- --cACAGCGGCGGCAGCa-GCAGGa- -3'
miRNA:   3'- caaUGUUGUCGCCGUUGcaCGUCUgg -5'
186 5' -50.6 AC_000007.1 + 10333 0.73 0.416333
Target:  5'- -gUGCGGCGGCGGCuGGCG-GUagagGGGCCa -3'
miRNA:   3'- caAUGUUGUCGCCG-UUGCaCG----UCUGG- -5'
186 5' -50.6 AC_000007.1 + 10497 0.73 0.416333
Target:  5'- uGUUGC-GCAGCGGCAAaaaGUGCu--CCa -3'
miRNA:   3'- -CAAUGuUGUCGCCGUUg--CACGucuGG- -5'
186 5' -50.6 AC_000007.1 + 8914 0.73 0.446148
Target:  5'- --cGCuccACGGUGGCGGCGaggucguuggagaUGCGGGCCa -3'
miRNA:   3'- caaUGu--UGUCGCCGUUGC-------------ACGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 15273 0.73 0.457764
Target:  5'- gGUUGC-GCAGCGGgGGCG-GCAGcuucuGCCg -3'
miRNA:   3'- -CAAUGuUGUCGCCgUUGCaCGUC-----UGG- -5'
186 5' -50.6 AC_000007.1 + 17247 0.72 0.468464
Target:  5'- gGUUGCcucGGCGGUGGCAgaugccGCgGUGCAGGCg -3'
miRNA:   3'- -CAAUG---UUGUCGCCGU------UG-CACGUCUGg -5'
186 5' -50.6 AC_000007.1 + 17562 0.72 0.47929
Target:  5'- --gGCGACGGCGGCGGCGgGUu--CCa -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCaCGucuGG- -5'
186 5' -50.6 AC_000007.1 + 8559 0.72 0.490238
Target:  5'- -aUGCAucuaaaAGCGGUGACGcggGCGGGCCc -3'
miRNA:   3'- caAUGUug----UCGCCGUUGCa--CGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 34904 0.72 0.501301
Target:  5'- uGUUGCAugGGCGGCGAUauaaaaUGCAGguGCUg -3'
miRNA:   3'- -CAAUGUugUCGCCGUUGc-----ACGUC--UGG- -5'
186 5' -50.6 AC_000007.1 + 3839 0.71 0.523744
Target:  5'- -cUGCAGCggcugaAGCGGCGGCGgaggcUGCAGucuCCa -3'
miRNA:   3'- caAUGUUG------UCGCCGUUGC-----ACGUCu--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.