miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
186 5' -50.6 AC_000007.1 + 2172 0.75 0.332045
Target:  5'- --gGCGGCGGCGGCGGCaggaGCAGAgCCc -3'
miRNA:   3'- caaUGUUGUCGCCGUUGca--CGUCU-GG- -5'
186 5' -50.6 AC_000007.1 + 3839 0.71 0.523744
Target:  5'- -cUGCAGCggcugaAGCGGCGGCGgaggcUGCAGucuCCa -3'
miRNA:   3'- caAUGUUG------UCGCCGUUGC-----ACGUCu--GG- -5'
186 5' -50.6 AC_000007.1 + 6535 0.68 0.721677
Target:  5'- --cGCAAgGGCGGCcGCcucUGCuGGACCa -3'
miRNA:   3'- caaUGUUgUCGCCGuUGc--ACG-UCUGG- -5'
186 5' -50.6 AC_000007.1 + 8559 0.72 0.490238
Target:  5'- -aUGCAucuaaaAGCGGUGACGcggGCGGGCCc -3'
miRNA:   3'- caAUGUug----UCGCCGUUGCa--CGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 8914 0.73 0.446148
Target:  5'- --cGCuccACGGUGGCGGCGaggucguuggagaUGCGGGCCa -3'
miRNA:   3'- caaUGu--UGUCGCCGUUGC-------------ACGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 9407 0.71 0.546561
Target:  5'- gGggAC-ACGGCGGCGACGacgGCGcACCg -3'
miRNA:   3'- -CaaUGuUGUCGCCGUUGCa--CGUcUGG- -5'
186 5' -50.6 AC_000007.1 + 9472 0.66 0.84721
Target:  5'- --gGCGACGGCgcauggucucGGUGACG-GCGcGGCCg -3'
miRNA:   3'- caaUGUUGUCG----------CCGUUGCaCGU-CUGG- -5'
186 5' -50.6 AC_000007.1 + 9731 0.66 0.828311
Target:  5'- --gGCG--GGCGGCAGCG-GguGGCg -3'
miRNA:   3'- caaUGUugUCGCCGUUGCaCguCUGg -5'
186 5' -50.6 AC_000007.1 + 9980 0.69 0.651903
Target:  5'- uUUGCAucuaucgcuACGGCGGCGGCGgaGUuuGGCCg -3'
miRNA:   3'- cAAUGU---------UGUCGCCGUUGCa-CGu-CUGG- -5'
186 5' -50.6 AC_000007.1 + 10333 0.73 0.416333
Target:  5'- -gUGCGGCGGCGGCuGGCG-GUagagGGGCCa -3'
miRNA:   3'- caAUGUUGUCGCCG-UUGCaCG----UCUGG- -5'
186 5' -50.6 AC_000007.1 + 10497 0.73 0.416333
Target:  5'- uGUUGC-GCAGCGGCAAaaaGUGCu--CCa -3'
miRNA:   3'- -CAAUGuUGUCGCCGUUg--CACGucuGG- -5'
186 5' -50.6 AC_000007.1 + 11064 0.74 0.367906
Target:  5'- ---uCAGCAGCGGCAagagcaagagcaGCG-GCAGACa -3'
miRNA:   3'- caauGUUGUCGCCGU------------UGCaCGUCUGg -5'
186 5' -50.6 AC_000007.1 + 11133 0.69 0.687062
Target:  5'- aGggGCAACAuccGCGGCugacGCGgcgGCAGAUg -3'
miRNA:   3'- -CaaUGUUGU---CGCCGu---UGCa--CGUCUGg -5'
186 5' -50.6 AC_000007.1 + 12207 0.68 0.698679
Target:  5'- --gGCAACGuCGGCGGCGUGgAGGa- -3'
miRNA:   3'- caaUGUUGUcGCCGUUGCACgUCUgg -5'
186 5' -50.6 AC_000007.1 + 12317 0.7 0.628336
Target:  5'- ---cCGGCGGUgcgGGCGGCGcUGCAGAgCCa -3'
miRNA:   3'- caauGUUGUCG---CCGUUGC-ACGUCU-GG- -5'
186 5' -50.6 AC_000007.1 + 12605 1.14 0.000755
Target:  5'- cGUUACAACAGCGGCAACGUGCAGACCa -3'
miRNA:   3'- -CAAUGUUGUCGCCGUUGCACGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 13023 0.76 0.306878
Target:  5'- ----gGACAGUGGCAGCGUGUcccgGGACa -3'
miRNA:   3'- caaugUUGUCGCCGUUGCACG----UCUGg -5'
186 5' -50.6 AC_000007.1 + 13540 0.71 0.569686
Target:  5'- --gACGACAGCGuguuuuccccGCAACc-GCAGACCc -3'
miRNA:   3'- caaUGUUGUCGC----------CGUUGcaCGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 13580 0.71 0.573177
Target:  5'- aGUUGCAACAGCgcgagcaggcagaGGCGGCGcugcgaaaggaaagcUuccGCAGGCCa -3'
miRNA:   3'- -CAAUGUUGUCG-------------CCGUUGC---------------A---CGUCUGG- -5'
186 5' -50.6 AC_000007.1 + 15066 0.78 0.240213
Target:  5'- --aACAACAGUGGCAGCGgcGCGGAa- -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCa-CGUCUgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.