miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18600 3' -55.2 NC_004682.1 + 2545 0.66 0.686209
Target:  5'- aAGACGAgaGcGGCUGGGa--CUGCAGa -3'
miRNA:   3'- -UCUGCUggC-CCGACCUguaGAUGUCg -5'
18600 3' -55.2 NC_004682.1 + 3233 0.66 0.707964
Target:  5'- -cGCGGCacaGGGC--GACAUCgGCGGCg -3'
miRNA:   3'- ucUGCUGg--CCCGacCUGUAGaUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 4551 0.68 0.597955
Target:  5'- aGGA-GACC-GGCUGGugGUguggccCUGCGGCc -3'
miRNA:   3'- -UCUgCUGGcCCGACCugUA------GAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 4954 0.67 0.608985
Target:  5'- cGACGACacccccggugcuCGGGCggucUGGAUcgCcACAGCg -3'
miRNA:   3'- uCUGCUG------------GCCCG----ACCUGuaGaUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 7362 0.72 0.34925
Target:  5'- uGACGACUuccaGCUuGGCGUCUACAGCg -3'
miRNA:   3'- uCUGCUGGcc--CGAcCUGUAGAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 7691 0.67 0.642158
Target:  5'- gGGACGACCGc-CUGGACcggagCgugGCGGCu -3'
miRNA:   3'- -UCUGCUGGCccGACCUGua---Ga--UGUCG- -5'
18600 3' -55.2 NC_004682.1 + 8503 0.66 0.707964
Target:  5'- uGGACGACCccgaagugcGGaGCUGG-C-UCUACcGCa -3'
miRNA:   3'- -UCUGCUGG---------CC-CGACCuGuAGAUGuCG- -5'
18600 3' -55.2 NC_004682.1 + 12167 0.68 0.602364
Target:  5'- aAGugGACCGGcacccuGCUGGACAacgucaccgagccgaUCcucaacACGGCg -3'
miRNA:   3'- -UCugCUGGCC------CGACCUGU---------------AGa-----UGUCG- -5'
18600 3' -55.2 NC_004682.1 + 13566 0.66 0.675247
Target:  5'- aAGAuCGcACCGGGCUGGuugacCAcCcACGGCc -3'
miRNA:   3'- -UCU-GC-UGGCCCGACCu----GUaGaUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 15455 0.66 0.685115
Target:  5'- cGAgGACUcccgcgaGGGCUGGGCggCUGCccuGGUg -3'
miRNA:   3'- uCUgCUGG-------CCCGACCUGuaGAUG---UCG- -5'
18600 3' -55.2 NC_004682.1 + 16721 0.66 0.718734
Target:  5'- cAGACGAuCUGGGCUG-ACAac-GCGGUg -3'
miRNA:   3'- -UCUGCU-GGCCCGACcUGUagaUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 18419 0.66 0.712282
Target:  5'- cGGCGaACUGGcGCUGGAUgcgucgGagaacucgcugcucgUCUACGGCg -3'
miRNA:   3'- uCUGC-UGGCC-CGACCUG------U---------------AGAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 18657 0.67 0.620035
Target:  5'- aGGACGAgCUGGaGCUGGaACGUC---AGCg -3'
miRNA:   3'- -UCUGCU-GGCC-CGACC-UGUAGaugUCG- -5'
18600 3' -55.2 NC_004682.1 + 19130 1.13 0.000525
Target:  5'- gAGACGACCGGGCUGGACAUCUACAGCg -3'
miRNA:   3'- -UCUGCUGGCCCGACCUGUAGAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 21486 0.68 0.565076
Target:  5'- aGGACGGCacaGGccGCUGGAagGUCUAC-GCg -3'
miRNA:   3'- -UCUGCUGg--CC--CGACCUg-UAGAUGuCG- -5'
18600 3' -55.2 NC_004682.1 + 22126 0.68 0.597955
Target:  5'- aGGACGGCCcgaaGGGCUGGGac-CUGgagauCGGCu -3'
miRNA:   3'- -UCUGCUGG----CCCGACCUguaGAU-----GUCG- -5'
18600 3' -55.2 NC_004682.1 + 23427 0.67 0.653211
Target:  5'- uAGGUGGCgGGGcCUGGAa--CUACGGCc -3'
miRNA:   3'- -UCUGCUGgCCC-GACCUguaGAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 23816 0.66 0.707964
Target:  5'- cAGAUGACCaGcGGcCUGGGCAa-UGCGGUc -3'
miRNA:   3'- -UCUGCUGG-C-CC-GACCUGUagAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 24340 0.72 0.34925
Target:  5'- cGGGCagaGCUGGGCUGcGugGUCgACGGCg -3'
miRNA:   3'- -UCUGc--UGGCCCGAC-CugUAGaUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 24527 0.7 0.4541
Target:  5'- cGGACuACCgGGGCUGGggcuucaucagcucuACGUCgaacgGCGGCa -3'
miRNA:   3'- -UCUGcUGG-CCCGACC---------------UGUAGa----UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.