Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18600 | 3' | -55.2 | NC_004682.1 | + | 28090 | 0.66 | 0.707964 |
Target: 5'- aAGACGcUCGGGCgUGGcuGC-UCgcgGCGGCg -3' miRNA: 3'- -UCUGCuGGCCCG-ACC--UGuAGa--UGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 41759 | 0.67 | 0.608985 |
Target: 5'- -aGCGACCGGgagaGCUGGgugaacGCGUCggaguCAGCg -3' miRNA: 3'- ucUGCUGGCC----CGACC------UGUAGau---GUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 32908 | 0.67 | 0.620035 |
Target: 5'- gAGACGACCGagaacgacaGGUgccgGGACG-CUcCAGCu -3' miRNA: 3'- -UCUGCUGGC---------CCGa---CCUGUaGAuGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 18657 | 0.67 | 0.620035 |
Target: 5'- aGGACGAgCUGGaGCUGGaACGUC---AGCg -3' miRNA: 3'- -UCUGCU-GGCC-CGACC-UGUAGaugUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 44173 | 0.67 | 0.631096 |
Target: 5'- gAGACGACgaCGGGaucgUGGGuCGagUGCAGCa -3' miRNA: 3'- -UCUGCUG--GCCCg---ACCU-GUagAUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 23427 | 0.67 | 0.653211 |
Target: 5'- uAGGUGGCgGGGcCUGGAa--CUACGGCc -3' miRNA: 3'- -UCUGCUGgCCC-GACCUguaGAUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 27181 | 0.66 | 0.685115 |
Target: 5'- cGGCGacccacuucgcGCCGGucuccuGCUGGGCGaugugggauacuuUCUGCGGCc -3' miRNA: 3'- uCUGC-----------UGGCC------CGACCUGU-------------AGAUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 3233 | 0.66 | 0.707964 |
Target: 5'- -cGCGGCacaGGGC--GACAUCgGCGGCg -3' miRNA: 3'- ucUGCUGg--CCCGacCUGUAGaUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 23816 | 0.66 | 0.707964 |
Target: 5'- cAGAUGACCaGcGGcCUGGGCAa-UGCGGUc -3' miRNA: 3'- -UCUGCUGG-C-CC-GACCUGUagAUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 31220 | 0.67 | 0.608985 |
Target: 5'- gAGACcGCCGGcaccaGCgGGAUcagcuUCUGCAGCa -3' miRNA: 3'- -UCUGcUGGCC-----CGaCCUGu----AGAUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 29811 | 0.67 | 0.608985 |
Target: 5'- cGAUGAUCGGGUUGu-CGUCUGCcaucAGUg -3' miRNA: 3'- uCUGCUGGCCCGACcuGUAGAUG----UCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 4954 | 0.67 | 0.608985 |
Target: 5'- cGACGACacccccggugcuCGGGCggucUGGAUcgCcACAGCg -3' miRNA: 3'- uCUGCUG------------GCCCG----ACCUGuaGaUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 24340 | 0.72 | 0.34925 |
Target: 5'- cGGGCagaGCUGGGCUGcGugGUCgACGGCg -3' miRNA: 3'- -UCUGc--UGGCCCGAC-CugUAGaUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 24527 | 0.7 | 0.4541 |
Target: 5'- cGGACuACCgGGGCUGGggcuucaucagcucuACGUCgaacgGCGGCa -3' miRNA: 3'- -UCUGcUGG-CCCGACC---------------UGUAGa----UGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 42777 | 0.7 | 0.480324 |
Target: 5'- cGGGCaGACCGGGCuucggucccaugUGGACGUUc-CAGUa -3' miRNA: 3'- -UCUG-CUGGCCCG------------ACCUGUAGauGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 35485 | 0.69 | 0.500989 |
Target: 5'- gGGugGuCCGGGUcgcagacgaugUGGACGU--ACAGCu -3' miRNA: 3'- -UCugCuGGCCCG-----------ACCUGUAgaUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 4551 | 0.68 | 0.597955 |
Target: 5'- aGGA-GACC-GGCUGGugGUguggccCUGCGGCc -3' miRNA: 3'- -UCUgCUGGcCCGACCugUA------GAUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 25338 | 0.68 | 0.597955 |
Target: 5'- cGACG-CUGGaCUGGGaccugAUCUACAGCc -3' miRNA: 3'- uCUGCuGGCCcGACCUg----UAGAUGUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 22126 | 0.68 | 0.597955 |
Target: 5'- aGGACGGCCcgaaGGGCUGGGac-CUGgagauCGGCu -3' miRNA: 3'- -UCUGCUGG----CCCGACCUguaGAU-----GUCG- -5' |
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18600 | 3' | -55.2 | NC_004682.1 | + | 12167 | 0.68 | 0.602364 |
Target: 5'- aAGugGACCGGcacccuGCUGGACAacgucaccgagccgaUCcucaacACGGCg -3' miRNA: 3'- -UCugCUGGCC------CGACCUGU---------------AGa-----UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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