miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18601 5' -54.3 NC_004682.1 + 18664 1.13 0.000674
Target:  5'- aAGUUGUCACCCGGCGAGGUCAACACCa -3'
miRNA:   3'- -UCAACAGUGGGCCGCUCCAGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 33323 0.75 0.269634
Target:  5'- cGUUGcCgaucagGCCCGagaGCGAGGUCAGCGCUg -3'
miRNA:   3'- uCAACaG------UGGGC---CGCUCCAGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 6234 0.74 0.329552
Target:  5'- aGGUgGUCGa-CGGUGAGGUCAgugACGCCg -3'
miRNA:   3'- -UCAaCAGUggGCCGCUCCAGU---UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 16166 0.74 0.337697
Target:  5'- ---aGUCgauGCgCGGCGAGGUCGGCAUUg -3'
miRNA:   3'- ucaaCAG---UGgGCCGCUCCAGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 644 0.73 0.363004
Target:  5'- cGGUUGccUCACCCaGGCGAccgaGGUCGACcacauCCg -3'
miRNA:   3'- -UCAAC--AGUGGG-CCGCU----CCAGUUGu----GG- -5'
18601 5' -54.3 NC_004682.1 + 18518 0.73 0.363004
Target:  5'- ---cGUCGCuCCGGCGgucgAGGagGACACCa -3'
miRNA:   3'- ucaaCAGUG-GGCCGC----UCCagUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 6480 0.73 0.371727
Target:  5'- ---cGUCAaagUCCGGUGAGGUCAAC-CUg -3'
miRNA:   3'- ucaaCAGU---GGGCCGCUCCAGUUGuGG- -5'
18601 5' -54.3 NC_004682.1 + 21365 0.71 0.466404
Target:  5'- cGGgcuUCAUCCgGGCGGuGGUCAACAUCg -3'
miRNA:   3'- -UCaacAGUGGG-CCGCU-CCAGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 46187 0.71 0.476553
Target:  5'- ---cGUCAgcuuCUCGGCGAGGUCAccgGCCa -3'
miRNA:   3'- ucaaCAGU----GGGCCGCUCCAGUug-UGG- -5'
18601 5' -54.3 NC_004682.1 + 4497 0.71 0.476553
Target:  5'- ---cG-CACCCGGCGGGcUCGGgGCCg -3'
miRNA:   3'- ucaaCaGUGGGCCGCUCcAGUUgUGG- -5'
18601 5' -54.3 NC_004682.1 + 49657 0.7 0.497172
Target:  5'- aAGUUGg-ACCCGGCGGcGGUC-AC-CCu -3'
miRNA:   3'- -UCAACagUGGGCCGCU-CCAGuUGuGG- -5'
18601 5' -54.3 NC_004682.1 + 33645 0.7 0.497172
Target:  5'- ---cGUCgaACCCGGUGccgcccuugaAGGUCAACACg -3'
miRNA:   3'- ucaaCAG--UGGGCCGC----------UCCAGUUGUGg -5'
18601 5' -54.3 NC_004682.1 + 27136 0.7 0.507631
Target:  5'- ---gGUCGCCa-GCGAcccgaaGGUCGACGCCa -3'
miRNA:   3'- ucaaCAGUGGgcCGCU------CCAGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 45444 0.7 0.518183
Target:  5'- gGGUcgGUCACCaGGcCGcGGUCGaaGCACCa -3'
miRNA:   3'- -UCAa-CAGUGGgCC-GCuCCAGU--UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 30588 0.7 0.52882
Target:  5'- cGUgcgGUCAUCaGGUgGAGGUCcGCGCCg -3'
miRNA:   3'- uCAa--CAGUGGgCCG-CUCCAGuUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 3709 0.7 0.539537
Target:  5'- gAGUcGUCGCUgaCGGCGAauacGGUCGcgacuACGCCg -3'
miRNA:   3'- -UCAaCAGUGG--GCCGCU----CCAGU-----UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 745 0.7 0.539537
Target:  5'- ---aGUCAUCCGcUGAGGgCAACGCCc -3'
miRNA:   3'- ucaaCAGUGGGCcGCUCCaGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 13748 0.7 0.539537
Target:  5'- ---cGUCA-CCGGCaugGAGGUCGGCaACCu -3'
miRNA:   3'- ucaaCAGUgGGCCG---CUCCAGUUG-UGG- -5'
18601 5' -54.3 NC_004682.1 + 25201 0.7 0.539537
Target:  5'- ---cGUCcaAgCUGGCGAGGcugUCGGCACCg -3'
miRNA:   3'- ucaaCAG--UgGGCCGCUCC---AGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 37858 0.69 0.561182
Target:  5'- cGUUGaUCGgCUGGcCGAGGUaccccgagaaCAGCGCCg -3'
miRNA:   3'- uCAAC-AGUgGGCC-GCUCCA----------GUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.