miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18601 5' -54.3 NC_004682.1 + 6234 0.74 0.329552
Target:  5'- aGGUgGUCGa-CGGUGAGGUCAgugACGCCg -3'
miRNA:   3'- -UCAaCAGUggGCCGCUCCAGU---UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 7742 0.69 0.572094
Target:  5'- cGGUgcccGUCGCCUGGCGAucugCAACGCg -3'
miRNA:   3'- -UCAa---CAGUGGGCCGCUcca-GUUGUGg -5'
18601 5' -54.3 NC_004682.1 + 48153 0.68 0.616157
Target:  5'- --aUGUCAggccCCCaGGCaGAGGUCGcugccgccACACCg -3'
miRNA:   3'- ucaACAGU----GGG-CCG-CUCCAGU--------UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 23616 0.68 0.66044
Target:  5'- --aUGUCGCuUCGGCGGuGGccaagaucaUCGACACCc -3'
miRNA:   3'- ucaACAGUG-GGCCGCU-CC---------AGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 13921 0.67 0.682463
Target:  5'- gGGUgaccGUCACCCgaGGCGAuGUCGACucguucaucaACCu -3'
miRNA:   3'- -UCAa---CAGUGGG--CCGCUcCAGUUG----------UGG- -5'
18601 5' -54.3 NC_004682.1 + 43422 0.67 0.715104
Target:  5'- uAGUaGUC-CCCGaucuGCGGGGgcUCGAUGCCg -3'
miRNA:   3'- -UCAaCAGuGGGC----CGCUCC--AGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 13431 0.66 0.746998
Target:  5'- aGGUcGUCA-CCGaCGAGGacggCAACACCc -3'
miRNA:   3'- -UCAaCAGUgGGCcGCUCCa---GUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 8285 0.66 0.767689
Target:  5'- gGGgagGUC-CCCcGCGAGGacgUgGACGCCa -3'
miRNA:   3'- -UCaa-CAGuGGGcCGCUCC---AgUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 11809 0.66 0.767689
Target:  5'- cGgcGUCGuggaCCGGCGAGGcCgAGCGCa -3'
miRNA:   3'- uCaaCAGUg---GGCCGCUCCaG-UUGUGg -5'
18601 5' -54.3 NC_004682.1 + 37858 0.69 0.561182
Target:  5'- cGUUGaUCGgCUGGcCGAGGUaccccgagaaCAGCGCCg -3'
miRNA:   3'- uCAAC-AGUgGGCC-GCUCCA----------GUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 25201 0.7 0.539537
Target:  5'- ---cGUCcaAgCUGGCGAGGcugUCGGCACCg -3'
miRNA:   3'- ucaaCAG--UgGGCCGCUCC---AGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 3709 0.7 0.539537
Target:  5'- gAGUcGUCGCUgaCGGCGAauacGGUCGcgacuACGCCg -3'
miRNA:   3'- -UCAaCAGUGG--GCCGCU----CCAGU-----UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 16166 0.74 0.337697
Target:  5'- ---aGUCgauGCgCGGCGAGGUCGGCAUUg -3'
miRNA:   3'- ucaaCAG---UGgGCCGCUCCAGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 644 0.73 0.363004
Target:  5'- cGGUUGccUCACCCaGGCGAccgaGGUCGACcacauCCg -3'
miRNA:   3'- -UCAAC--AGUGGG-CCGCU----CCAGUUGu----GG- -5'
18601 5' -54.3 NC_004682.1 + 6480 0.73 0.371727
Target:  5'- ---cGUCAaagUCCGGUGAGGUCAAC-CUg -3'
miRNA:   3'- ucaaCAGU---GGGCCGCUCCAGUUGuGG- -5'
18601 5' -54.3 NC_004682.1 + 21365 0.71 0.466404
Target:  5'- cGGgcuUCAUCCgGGCGGuGGUCAACAUCg -3'
miRNA:   3'- -UCaacAGUGGG-CCGCU-CCAGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 46187 0.71 0.476553
Target:  5'- ---cGUCAgcuuCUCGGCGAGGUCAccgGCCa -3'
miRNA:   3'- ucaaCAGU----GGGCCGCUCCAGUug-UGG- -5'
18601 5' -54.3 NC_004682.1 + 33645 0.7 0.497172
Target:  5'- ---cGUCgaACCCGGUGccgcccuugaAGGUCAACACg -3'
miRNA:   3'- ucaaCAG--UGGGCCGC----------UCCAGUUGUGg -5'
18601 5' -54.3 NC_004682.1 + 30588 0.7 0.52882
Target:  5'- cGUgcgGUCAUCaGGUgGAGGUCcGCGCCg -3'
miRNA:   3'- uCAa--CAGUGGgCCG-CUCCAGuUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 745 0.7 0.539537
Target:  5'- ---aGUCAUCCGcUGAGGgCAACGCCc -3'
miRNA:   3'- ucaaCAGUGGGCcGCUCCaGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.