miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18609 5' -58 NC_004682.1 + 3012 0.66 0.579151
Target:  5'- gUCGAcaUCCCGuggucagcaACGCAGGucaccgGCACUgUCGg -3'
miRNA:   3'- gAGCU--AGGGC---------UGCGUCC------UGUGGgAGC- -5'
18609 5' -58 NC_004682.1 + 3131 0.69 0.407603
Target:  5'- gUCGAUCaCUGGCGCAGGcgGCGCagcagccgccaaCUCGg -3'
miRNA:   3'- gAGCUAG-GGCUGCGUCC--UGUGg-----------GAGC- -5'
18609 5' -58 NC_004682.1 + 5128 0.69 0.418568
Target:  5'- -cCGAUCCUGGCGCGugcugcGGGCAUCUcCGa -3'
miRNA:   3'- gaGCUAGGGCUGCGU------CCUGUGGGaGC- -5'
18609 5' -58 NC_004682.1 + 6653 0.66 0.5443
Target:  5'- uUCGAUgaguggauucaCCCgGugGCAGGcccagacucguacgGCAUCCUCGa -3'
miRNA:   3'- gAGCUA-----------GGG-CugCGUCC--------------UGUGGGAGC- -5'
18609 5' -58 NC_004682.1 + 8120 0.67 0.485901
Target:  5'- -cCGuUCCCGACGCuGGAgGCCg-CGa -3'
miRNA:   3'- gaGCuAGGGCUGCGuCCUgUGGgaGC- -5'
18609 5' -58 NC_004682.1 + 9439 0.69 0.381858
Target:  5'- gCUCGGUCaCCGACGCAgcugcccGGACGCUg--- -3'
miRNA:   3'- -GAGCUAG-GGCUGCGU-------CCUGUGGgagc -5'
18609 5' -58 NC_004682.1 + 11397 0.66 0.557958
Target:  5'- gCUCGAUgucgugacCCUGAUcCAGGGCACCgaCGa -3'
miRNA:   3'- -GAGCUA--------GGGCUGcGUCCUGUGGgaGC- -5'
18609 5' -58 NC_004682.1 + 14056 0.7 0.34089
Target:  5'- gCUCGaAUCuCCGggcACGguGGACaagGCCCUCGc -3'
miRNA:   3'- -GAGC-UAG-GGC---UGCguCCUG---UGGGAGC- -5'
18609 5' -58 NC_004682.1 + 15214 0.67 0.536991
Target:  5'- gCUgGGUCUCGG-GCuGGACcgagaaGCCCUCGg -3'
miRNA:   3'- -GAgCUAGGGCUgCGuCCUG------UGGGAGC- -5'
18609 5' -58 NC_004682.1 + 16145 0.7 0.35722
Target:  5'- aCUCGGuUCCUGAUGCGGGcgACGuuCUCGc -3'
miRNA:   3'- -GAGCU-AGGGCUGCGUCC--UGUggGAGC- -5'
18609 5' -58 NC_004682.1 + 16593 1.08 0.000713
Target:  5'- uCUCGAUCCCGACGCAGGACACCCUCGu -3'
miRNA:   3'- -GAGCUAGGGCUGCGUCCUGUGGGAGC- -5'
18609 5' -58 NC_004682.1 + 21759 0.66 0.589814
Target:  5'- -cCGAcaucUCCCG--GCAGGACGCUCUgGa -3'
miRNA:   3'- gaGCU----AGGGCugCGUCCUGUGGGAgC- -5'
18609 5' -58 NC_004682.1 + 25624 0.67 0.516304
Target:  5'- aCUCGGUCCCGucgaaguaGCGCuguccGGGCGCUC-Ca -3'
miRNA:   3'- -GAGCUAGGGC--------UGCGu----CCUGUGGGaGc -5'
18609 5' -58 NC_004682.1 + 30904 0.68 0.475955
Target:  5'- cCUCGGUgaucgcCUCGGCgaGCGGGuCGCCCUCc -3'
miRNA:   3'- -GAGCUA------GGGCUG--CGUCCuGUGGGAGc -5'
18609 5' -58 NC_004682.1 + 35845 0.68 0.44675
Target:  5'- gUCG-UCCCGGCGCAccGACGCCUUg- -3'
miRNA:   3'- gAGCuAGGGCUGCGUc-CUGUGGGAgc -5'
18609 5' -58 NC_004682.1 + 37317 0.66 0.56959
Target:  5'- gUCGAUCCCGAaucccucgaagucgaGCAGGuucuCGaaguugaagaacCCCUCGu -3'
miRNA:   3'- gAGCUAGGGCUg--------------CGUCCu---GU------------GGGAGC- -5'
18609 5' -58 NC_004682.1 + 37751 0.66 0.547443
Target:  5'- gUCGGUCuCCGAC--AGGuaGCCCUCGg -3'
miRNA:   3'- gAGCUAG-GGCUGcgUCCugUGGGAGC- -5'
18609 5' -58 NC_004682.1 + 38149 0.74 0.191236
Target:  5'- aCUCG-UCCCccuggugGACGUAgucguGGACGCCCUCGg -3'
miRNA:   3'- -GAGCuAGGG-------CUGCGU-----CCUGUGGGAGC- -5'
18609 5' -58 NC_004682.1 + 40743 0.67 0.525575
Target:  5'- uCUCGAUcuggaccggccagCCCGACugGCGGGcaccccACGCCCaUCGg -3'
miRNA:   3'- -GAGCUA-------------GGGCUG--CGUCC------UGUGGG-AGC- -5'
18609 5' -58 NC_004682.1 + 42526 0.66 0.56853
Target:  5'- gCUCGAUguaCCCGACGUggcucGGcGGCGCCuCUgCGg -3'
miRNA:   3'- -GAGCUA---GGGCUGCG-----UC-CUGUGG-GA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.