Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18609 | 5' | -58 | NC_004682.1 | + | 38149 | 0.74 | 0.191236 |
Target: 5'- aCUCG-UCCCccuggugGACGUAgucguGGACGCCCUCGg -3' miRNA: 3'- -GAGCuAGGG-------CUGCGU-----CCUGUGGGAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 3012 | 0.66 | 0.579151 |
Target: 5'- gUCGAcaUCCCGuggucagcaACGCAGGucaccgGCACUgUCGg -3' miRNA: 3'- gAGCU--AGGGC---------UGCGUCC------UGUGGgAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 37317 | 0.66 | 0.56959 |
Target: 5'- gUCGAUCCCGAaucccucgaagucgaGCAGGuucuCGaaguugaagaacCCCUCGu -3' miRNA: 3'- gAGCUAGGGCUg--------------CGUCCu---GU------------GGGAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 42526 | 0.66 | 0.56853 |
Target: 5'- gCUCGAUguaCCCGACGUggcucGGcGGCGCCuCUgCGg -3' miRNA: 3'- -GAGCUA---GGGCUGCG-----UC-CUGUGG-GA-GC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 11397 | 0.66 | 0.557958 |
Target: 5'- gCUCGAUgucgugacCCUGAUcCAGGGCACCgaCGa -3' miRNA: 3'- -GAGCUA--------GGGCUGcGUCCUGUGGgaGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 6653 | 0.66 | 0.5443 |
Target: 5'- uUCGAUgaguggauucaCCCgGugGCAGGcccagacucguacgGCAUCCUCGa -3' miRNA: 3'- gAGCUA-----------GGG-CugCGUCC--------------UGUGGGAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 46673 | 0.67 | 0.536991 |
Target: 5'- uCUCGA-UgUGGCGCGGGACGCCg--- -3' miRNA: 3'- -GAGCUaGgGCUGCGUCCUGUGGgagc -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 40743 | 0.67 | 0.525575 |
Target: 5'- uCUCGAUcuggaccggccagCCCGACugGCGGGcaccccACGCCCaUCGg -3' miRNA: 3'- -GAGCUA-------------GGGCUG--CGUCC------UGUGGG-AGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 25624 | 0.67 | 0.516304 |
Target: 5'- aCUCGGUCCCGucgaaguaGCGCuguccGGGCGCUC-Ca -3' miRNA: 3'- -GAGCUAGGGC--------UGCGu----CCUGUGGGaGc -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 30904 | 0.68 | 0.475955 |
Target: 5'- cCUCGGUgaucgcCUCGGCgaGCGGGuCGCCCUCc -3' miRNA: 3'- -GAGCUA------GGGCUG--CGUCCuGUGGGAGc -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 5128 | 0.69 | 0.418568 |
Target: 5'- -cCGAUCCUGGCGCGugcugcGGGCAUCUcCGa -3' miRNA: 3'- gaGCUAGGGCUGCGU------CCUGUGGGaGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 3131 | 0.69 | 0.407603 |
Target: 5'- gUCGAUCaCUGGCGCAGGcgGCGCagcagccgccaaCUCGg -3' miRNA: 3'- gAGCUAG-GGCUGCGUCC--UGUGg-----------GAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 9439 | 0.69 | 0.381858 |
Target: 5'- gCUCGGUCaCCGACGCAgcugcccGGACGCUg--- -3' miRNA: 3'- -GAGCUAG-GGCUGCGU-------CCUGUGGgagc -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 46215 | 0.67 | 0.526609 |
Target: 5'- cCUCGAUCUCGGCaGCgAGcGugGCCUcCGg -3' miRNA: 3'- -GAGCUAGGGCUG-CG-UC-CugUGGGaGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 15214 | 0.67 | 0.536991 |
Target: 5'- gCUgGGUCUCGG-GCuGGACcgagaaGCCCUCGg -3' miRNA: 3'- -GAgCUAGGGCUgCGuCCUG------UGGGAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 37751 | 0.66 | 0.547443 |
Target: 5'- gUCGGUCuCCGAC--AGGuaGCCCUCGg -3' miRNA: 3'- gAGCUAG-GGCUGcgUCCugUGGGAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 42679 | 0.66 | 0.579151 |
Target: 5'- gUCGAaCCCGAgCGUgauccGGuCACCCUUGg -3' miRNA: 3'- gAGCUaGGGCU-GCGu----CCuGUGGGAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 48375 | 0.66 | 0.579151 |
Target: 5'- cCUUGGgcaCCUGugGCAccGGuauCACCCUUGg -3' miRNA: 3'- -GAGCUa--GGGCugCGU--CCu--GUGGGAGC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 21759 | 0.66 | 0.589814 |
Target: 5'- -cCGAcaucUCCCG--GCAGGACGCUCUgGa -3' miRNA: 3'- gaGCU----AGGGCugCGUCCUGUGGGAgC- -5' |
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18609 | 5' | -58 | NC_004682.1 | + | 16593 | 1.08 | 0.000713 |
Target: 5'- uCUCGAUCCCGACGCAGGACACCCUCGu -3' miRNA: 3'- -GAGCUAGGGCUGCGUCCUGUGGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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