miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18620 5' -58.7 NC_004682.1 + 12662 1.12 0.000286
Target:  5'- aCGAACUCGGCUGGACCGAGGGCGUCCa -3'
miRNA:   3'- -GCUUGAGCCGACCUGGCUCCCGCAGG- -5'
18620 5' -58.7 NC_004682.1 + 22980 0.73 0.207824
Target:  5'- cCGGGCUggccuucgGGCUGGuCCGGGGGgcCGUCCu -3'
miRNA:   3'- -GCUUGAg-------CCGACCuGGCUCCC--GCAGG- -5'
18620 5' -58.7 NC_004682.1 + 35603 0.72 0.254614
Target:  5'- uGAACUCGaagUGGuCCGAGGGCuucucgGUCCa -3'
miRNA:   3'- gCUUGAGCcg-ACCuGGCUCCCG------CAGG- -5'
18620 5' -58.7 NC_004682.1 + 34229 0.7 0.324832
Target:  5'- uCGAucacCUCGGCga---CGAGGGUGUCCu -3'
miRNA:   3'- -GCUu---GAGCCGaccugGCUCCCGCAGG- -5'
18620 5' -58.7 NC_004682.1 + 14905 0.7 0.339699
Target:  5'- uCGGcguCUCGGCUGcgagcggcgacccGACCGAGaaGGCGUUCc -3'
miRNA:   3'- -GCUu--GAGCCGAC-------------CUGGCUC--CCGCAGG- -5'
18620 5' -58.7 NC_004682.1 + 7121 0.69 0.360003
Target:  5'- -cGACggCGGCUGGuaccugcCCGAgaagacgcucggcugGGGCGUCCu -3'
miRNA:   3'- gcUUGa-GCCGACCu------GGCU---------------CCCGCAGG- -5'
18620 5' -58.7 NC_004682.1 + 37369 0.68 0.399522
Target:  5'- uCGuACUCaGCcaGGGCCG-GGGCGUaCCg -3'
miRNA:   3'- -GCuUGAGcCGa-CCUGGCuCCCGCA-GG- -5'
18620 5' -58.7 NC_004682.1 + 9132 0.68 0.426744
Target:  5'- aGAAgUCGGCcaGGGCggugcgUGAGGGCGaCCu -3'
miRNA:   3'- gCUUgAGCCGa-CCUG------GCUCCCGCaGG- -5'
18620 5' -58.7 NC_004682.1 + 42463 0.68 0.445492
Target:  5'- uGAACU-GGCUGG-CCGGGGuCGgCCu -3'
miRNA:   3'- gCUUGAgCCGACCuGGCUCCcGCaGG- -5'
18620 5' -58.7 NC_004682.1 + 2609 0.68 0.445492
Target:  5'- aGGugUcgCGGCUGG-CCGAuacgaggccGGCGUCCu -3'
miRNA:   3'- gCUugA--GCCGACCuGGCUc--------CCGCAGG- -5'
18620 5' -58.7 NC_004682.1 + 42971 0.67 0.455037
Target:  5'- gGGugUCaGCggGGGCCuccAGGGCGUCg -3'
miRNA:   3'- gCUugAGcCGa-CCUGGc--UCCCGCAGg -5'
18620 5' -58.7 NC_004682.1 + 34277 0.67 0.474451
Target:  5'- uCGAGCcUGGUUGG-CCGucAGGGUcuuGUCCu -3'
miRNA:   3'- -GCUUGaGCCGACCuGGC--UCCCG---CAGG- -5'
18620 5' -58.7 NC_004682.1 + 48614 0.67 0.484313
Target:  5'- gGGAC-CuGCUGGGCCGGuGG-GUCCg -3'
miRNA:   3'- gCUUGaGcCGACCUGGCUcCCgCAGG- -5'
18620 5' -58.7 NC_004682.1 + 16678 0.67 0.484313
Target:  5'- uCGGGCggcagCGGUgaUGGGCCugGAGGGCucgggucgauGUCCc -3'
miRNA:   3'- -GCUUGa----GCCG--ACCUGG--CUCCCG----------CAGG- -5'
18620 5' -58.7 NC_004682.1 + 27173 0.67 0.490277
Target:  5'- uCGAACUCGccccgcaGgaGGGCCGcaggcccgucggucAGGGUGUCg -3'
miRNA:   3'- -GCUUGAGC-------CgaCCUGGC--------------UCCCGCAGg -5'
18620 5' -58.7 NC_004682.1 + 13537 0.67 0.504323
Target:  5'- aCGGGC-CGaGCaGGACaaCGAGGGCuucgaGUCCg -3'
miRNA:   3'- -GCUUGaGC-CGaCCUG--GCUCCCG-----CAGG- -5'
18620 5' -58.7 NC_004682.1 + 42530 0.66 0.514462
Target:  5'- gCGAACaUCGaGC-GGACgGu-GGCGUCCa -3'
miRNA:   3'- -GCUUG-AGC-CGaCCUGgCucCCGCAGG- -5'
18620 5' -58.7 NC_004682.1 + 23442 0.66 0.514462
Target:  5'- gGAACUaCGGCcaGGAcuucaCCGAGGacgcCGUCCg -3'
miRNA:   3'- gCUUGA-GCCGa-CCU-----GGCUCCc---GCAGG- -5'
18620 5' -58.7 NC_004682.1 + 26410 0.66 0.51854
Target:  5'- uCGAACgUCGGCgGGGCCagccGGaucggguugcccucaGCGUCCa -3'
miRNA:   3'- -GCUUG-AGCCGaCCUGGcu--CC---------------CGCAGG- -5'
18620 5' -58.7 NC_004682.1 + 24345 0.66 0.524682
Target:  5'- aGAGCUgGGCUGcGuggUCGAcGGCGUCa -3'
miRNA:   3'- gCUUGAgCCGAC-Cu--GGCUcCCGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.