miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18643 5' -58 NC_004682.1 + 897 1.11 0.000315
Target:  5'- gCCACAGGCAUCGCACGCCCCACUGACa -3'
miRNA:   3'- -GGUGUCCGUAGCGUGCGGGGUGACUG- -5'
18643 5' -58 NC_004682.1 + 30132 0.71 0.275402
Target:  5'- gCCAuCAGGCGagCGaucuccugaGCGCCCCACUG-Cg -3'
miRNA:   3'- -GGU-GUCCGUa-GCg--------UGCGGGGUGACuG- -5'
18643 5' -58 NC_004682.1 + 27409 0.71 0.289503
Target:  5'- gCCACGGGCGgcacaaUCGCcguCGgCgCACUGGCg -3'
miRNA:   3'- -GGUGUCCGU------AGCGu--GCgGgGUGACUG- -5'
18643 5' -58 NC_004682.1 + 11768 0.7 0.311708
Target:  5'- uCCgACcGGCAUCaGCAUcCCCCACUGGa -3'
miRNA:   3'- -GG-UGuCCGUAG-CGUGcGGGGUGACUg -5'
18643 5' -58 NC_004682.1 + 17400 0.7 0.319391
Target:  5'- cCCAgAGGCAgUCGaaCGCGCCCCA--GGCg -3'
miRNA:   3'- -GGUgUCCGU-AGC--GUGCGGGGUgaCUG- -5'
18643 5' -58 NC_004682.1 + 20052 0.69 0.377109
Target:  5'- gCUGCAGGC-UCGCACGgCUCGCaUGuCg -3'
miRNA:   3'- -GGUGUCCGuAGCGUGCgGGGUG-ACuG- -5'
18643 5' -58 NC_004682.1 + 17328 0.69 0.377109
Target:  5'- gC-CAGGCGUUcgcgaaGCugGCCCCgcagcaggccGCUGGCg -3'
miRNA:   3'- gGuGUCCGUAG------CGugCGGGG----------UGACUG- -5'
18643 5' -58 NC_004682.1 + 8976 0.68 0.394841
Target:  5'- cUCGCGcGGUcugUGCugGCCCCggcACUGGCa -3'
miRNA:   3'- -GGUGU-CCGua-GCGugCGGGG---UGACUG- -5'
18643 5' -58 NC_004682.1 + 13863 0.68 0.422428
Target:  5'- gCACAGGCccgCGCAuCGaCgCGCUGGCa -3'
miRNA:   3'- gGUGUCCGua-GCGU-GCgGgGUGACUG- -5'
18643 5' -58 NC_004682.1 + 24412 0.68 0.431878
Target:  5'- aCGCugaGGGCAacccgaUCcgGCugGCCCCGCcGACg -3'
miRNA:   3'- gGUG---UCCGU------AG--CGugCGGGGUGaCUG- -5'
18643 5' -58 NC_004682.1 + 41011 0.68 0.431878
Target:  5'- gCCACGcGCAUCGCuuGCuCCCACg--- -3'
miRNA:   3'- -GGUGUcCGUAGCGugCG-GGGUGacug -5'
18643 5' -58 NC_004682.1 + 5372 0.68 0.431878
Target:  5'- gCCgACAGcGCAUgGCACGUCgCACacgGGCa -3'
miRNA:   3'- -GG-UGUC-CGUAgCGUGCGGgGUGa--CUG- -5'
18643 5' -58 NC_004682.1 + 15401 0.68 0.44145
Target:  5'- -gGCAGGCGUCcugucgacggaGUACGaCCCCgACUGGg -3'
miRNA:   3'- ggUGUCCGUAG-----------CGUGC-GGGG-UGACUg -5'
18643 5' -58 NC_004682.1 + 27907 0.68 0.44145
Target:  5'- gCugAGGCGaaGggUGCCCCGCUGGa -3'
miRNA:   3'- gGugUCCGUagCguGCGGGGUGACUg -5'
18643 5' -58 NC_004682.1 + 6117 0.67 0.451141
Target:  5'- gCCACcggcGGCGUCgGCAUGCCCgACgaGAa -3'
miRNA:   3'- -GGUGu---CCGUAG-CGUGCGGGgUGa-CUg -5'
18643 5' -58 NC_004682.1 + 7957 0.67 0.451141
Target:  5'- uCCGagaGGGCAUCGagauCGCCCgagggacucgUACUGGCu -3'
miRNA:   3'- -GGUg--UCCGUAGCgu--GCGGG----------GUGACUG- -5'
18643 5' -58 NC_004682.1 + 39634 0.67 0.460948
Target:  5'- gCACAGGUA-CGCccAUGCCCCGa-GACc -3'
miRNA:   3'- gGUGUCCGUaGCG--UGCGGGGUgaCUG- -5'
18643 5' -58 NC_004682.1 + 12416 0.67 0.470866
Target:  5'- gCACAGGCGUgGCA-GCCgCACUu-- -3'
miRNA:   3'- gGUGUCCGUAgCGUgCGGgGUGAcug -5'
18643 5' -58 NC_004682.1 + 3288 0.67 0.470866
Target:  5'- aCGCGGGCAUCGU-CGgCCaC-CUGAUg -3'
miRNA:   3'- gGUGUCCGUAGCGuGCgGG-GuGACUG- -5'
18643 5' -58 NC_004682.1 + 2230 0.67 0.480892
Target:  5'- cCCACcGGCccaGCAgGUCCCACcGGCc -3'
miRNA:   3'- -GGUGuCCGuagCGUgCGGGGUGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.