Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18643 | 5' | -58 | NC_004682.1 | + | 30132 | 0.71 | 0.275402 |
Target: 5'- gCCAuCAGGCGagCGaucuccugaGCGCCCCACUG-Cg -3' miRNA: 3'- -GGU-GUCCGUa-GCg--------UGCGGGGUGACuG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 7297 | 0.66 | 0.564337 |
Target: 5'- aCCGCgaGGGCAUCcuGCGcCGCCUCaaggGCUGGg -3' miRNA: 3'- -GGUG--UCCGUAG--CGU-GCGGGG----UGACUg -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 48161 | 0.66 | 0.553647 |
Target: 5'- cCCcCAGGCAgaggUCGC-UGCCgCCACaccgGGCg -3' miRNA: 3'- -GGuGUCCGU----AGCGuGCGG-GGUGa---CUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 4732 | 0.66 | 0.553647 |
Target: 5'- gCCGCAGGCG-CGCuacACGUcggUCUACcUGACg -3' miRNA: 3'- -GGUGUCCGUaGCG---UGCG---GGGUG-ACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 3142 | 0.66 | 0.532457 |
Target: 5'- gCGCAGGCggCGCAgcaGCCgCCAacucgGGCa -3' miRNA: 3'- gGUGUCCGuaGCGUg--CGG-GGUga---CUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 6908 | 0.66 | 0.526155 |
Target: 5'- aCCGaGGGCAUCGCAaugGCCCUggcgaucaucgacacGCUG-Cg -3' miRNA: 3'- -GGUgUCCGUAGCGUg--CGGGG---------------UGACuG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 16852 | 0.66 | 0.511564 |
Target: 5'- gCCAUcGGCcugGUgGCugGCCUC-CUGGCu -3' miRNA: 3'- -GGUGuCCG---UAgCGugCGGGGuGACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 33298 | 0.67 | 0.501246 |
Target: 5'- gUCACAuuCGUCGUuccgguCGCCCgACUGGCa -3' miRNA: 3'- -GGUGUccGUAGCGu-----GCGGGgUGACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 2230 | 0.67 | 0.480892 |
Target: 5'- cCCACcGGCccaGCAgGUCCCACcGGCc -3' miRNA: 3'- -GGUGuCCGuagCGUgCGGGGUGaCUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 27409 | 0.71 | 0.289503 |
Target: 5'- gCCACGGGCGgcacaaUCGCcguCGgCgCACUGGCg -3' miRNA: 3'- -GGUGUCCGU------AGCGu--GCgGgGUGACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 11768 | 0.7 | 0.311708 |
Target: 5'- uCCgACcGGCAUCaGCAUcCCCCACUGGa -3' miRNA: 3'- -GG-UGuCCGUAG-CGUGcGGGGUGACUg -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 13863 | 0.68 | 0.422428 |
Target: 5'- gCACAGGCccgCGCAuCGaCgCGCUGGCa -3' miRNA: 3'- gGUGUCCGua-GCGU-GCgGgGUGACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 27907 | 0.68 | 0.44145 |
Target: 5'- gCugAGGCGaaGggUGCCCCGCUGGa -3' miRNA: 3'- gGugUCCGUagCguGCGGGGUGACUg -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 7957 | 0.67 | 0.451141 |
Target: 5'- uCCGagaGGGCAUCGagauCGCCCgagggacucgUACUGGCu -3' miRNA: 3'- -GGUg--UCCGUAGCgu--GCGGG----------GUGACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 39634 | 0.67 | 0.460948 |
Target: 5'- gCACAGGUA-CGCccAUGCCCCGa-GACc -3' miRNA: 3'- gGUGUCCGUaGCG--UGCGGGGUgaCUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 897 | 1.11 | 0.000315 |
Target: 5'- gCCACAGGCAUCGCACGCCCCACUGACa -3' miRNA: 3'- -GGUGUCCGUAGCGUGCGGGGUGACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 33591 | 0.66 | 0.511564 |
Target: 5'- gCCGaAGGCGUCGgA-GCCCgaGCUGGCc -3' miRNA: 3'- -GGUgUCCGUAGCgUgCGGGg-UGACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 14493 | 0.67 | 0.501246 |
Target: 5'- uCCGCAGG-GUCgaGCACGUcaCCCGCgacGACg -3' miRNA: 3'- -GGUGUCCgUAG--CGUGCG--GGGUGa--CUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 9845 | 0.67 | 0.501246 |
Target: 5'- aCUAC-GGCAccgaGCugGCCaggCCGCUGGCu -3' miRNA: 3'- -GGUGuCCGUag--CGugCGG---GGUGACUG- -5' |
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18643 | 5' | -58 | NC_004682.1 | + | 42545 | 0.67 | 0.49102 |
Target: 5'- aCGguGGCGUC-CACGUCCuCGCggggGACc -3' miRNA: 3'- gGUguCCGUAGcGUGCGGG-GUGa---CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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