miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18645 5' -61.6 NC_004682.1 + 35370 0.66 0.381643
Target:  5'- aUCCACCagGGCAgCCgCCCaGCCCUcGcGGg -3'
miRNA:   3'- -GGGUGGa-CCGU-GG-GGGaCGGGA-CaUC- -5'
18645 5' -61.6 NC_004682.1 + 6904 0.66 0.373111
Target:  5'- gCUCACCgagGGCAUCgCaaugGCCCUGgcGa -3'
miRNA:   3'- -GGGUGGa--CCGUGGgGga--CGGGACauC- -5'
18645 5' -61.6 NC_004682.1 + 12116 0.66 0.373111
Target:  5'- gCCUACCUGGCggucaacaACgCCCUGUcgcuCCUGg-- -3'
miRNA:   3'- -GGGUGGACCG--------UGgGGGACG----GGACauc -5'
18645 5' -61.6 NC_004682.1 + 189 0.66 0.348304
Target:  5'- aCC-CCUGcCugCaCCCUGCCCUGc-- -3'
miRNA:   3'- gGGuGGACcGugG-GGGACGGGACauc -5'
18645 5' -61.6 NC_004682.1 + 275 0.67 0.30963
Target:  5'- gCCUACCcGGUACCCCCaguaCCCaGUAc -3'
miRNA:   3'- -GGGUGGaCCGUGGGGGac--GGGaCAUc -5'
18645 5' -61.6 NC_004682.1 + 17778 0.68 0.274317
Target:  5'- aCCaACCUGGCACCgcacauCCCgGCCCUc--- -3'
miRNA:   3'- gGG-UGGACCGUGG------GGGaCGGGAcauc -5'
18645 5' -61.6 NC_004682.1 + 48248 0.68 0.267653
Target:  5'- gCCugCUGGacccugugGCCCCUgaaUGCCCUGcGGg -3'
miRNA:   3'- gGGugGACCg-------UGGGGG---ACGGGACaUC- -5'
18645 5' -61.6 NC_004682.1 + 8581 0.69 0.236286
Target:  5'- aCCGCgCUGGCuACCCCg-GCCCcGUGa -3'
miRNA:   3'- gGGUG-GACCG-UGGGGgaCGGGaCAUc -5'
18645 5' -61.6 NC_004682.1 + 8083 0.69 0.230394
Target:  5'- gCCCGCgUGGCACgUCCUGaCCCa---- -3'
miRNA:   3'- -GGGUGgACCGUGgGGGAC-GGGacauc -5'
18645 5' -61.6 NC_004682.1 + 124 0.72 0.151993
Target:  5'- cCCCGUCUcGGCACCCUgUGCCCaGUGc -3'
miRNA:   3'- -GGGUGGA-CCGUGGGGgACGGGaCAUc -5'
18645 5' -61.6 NC_004682.1 + 19379 0.74 0.10999
Target:  5'- gCCCACCUGGUggACCCCagGCCCUucaaggaagGUGGc -3'
miRNA:   3'- -GGGUGGACCG--UGGGGgaCGGGA---------CAUC- -5'
18645 5' -61.6 NC_004682.1 + 13460 0.74 0.10999
Target:  5'- cCUCACCcGGUACgCCCCgGCCCUGg-- -3'
miRNA:   3'- -GGGUGGaCCGUG-GGGGaCGGGACauc -5'
18645 5' -61.6 NC_004682.1 + 362 0.74 0.101329
Target:  5'- cCCCugUagGGCACCCCCUGCacCCUGc-- -3'
miRNA:   3'- -GGGugGa-CCGUGGGGGACG--GGACauc -5'
18645 5' -61.6 NC_004682.1 + 250 0.76 0.070731
Target:  5'- cCCUACCcGGUACCCcaCCUGCCCUGc-- -3'
miRNA:   3'- -GGGUGGaCCGUGGG--GGACGGGACauc -5'
18645 5' -61.6 NC_004682.1 + 319 1.1 0.000174
Target:  5'- cCCCACCUGGCACCCCCUGCCCUGUAGg -3'
miRNA:   3'- -GGGUGGACCGUGGGGGACGGGACAUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.