miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18646 3' -54.9 NC_004682.1 + 50055 0.66 0.73658
Target:  5'- aGGAGCGC-CaCCUUCCcgAAUucucaGCCGGg -3'
miRNA:   3'- -CCUCGCGaGgGGAAGG--UUAuc---UGGCC- -5'
18646 3' -54.9 NC_004682.1 + 43905 0.66 0.73658
Target:  5'- uGGAcuGC-CUCCCCUgcgggagCCAGgcGGCUGGc -3'
miRNA:   3'- -CCU--CGcGAGGGGAa------GGUUauCUGGCC- -5'
18646 3' -54.9 NC_004682.1 + 6523 0.66 0.726036
Target:  5'- gGGAGCgaaGCUCCCUggcaccgUCCAu--GAUCGa -3'
miRNA:   3'- -CCUCG---CGAGGGGa------AGGUuauCUGGCc -5'
18646 3' -54.9 NC_004682.1 + 15701 0.67 0.704681
Target:  5'- cGAGCGCUCggCUUCCccc-GGCUGGg -3'
miRNA:   3'- cCUCGCGAGggGAAGGuuauCUGGCC- -5'
18646 3' -54.9 NC_004682.1 + 37532 0.67 0.693892
Target:  5'- -cAGCGgUgCCCUugcUCCAccGGGCCGGc -3'
miRNA:   3'- ccUCGCgAgGGGA---AGGUuaUCUGGCC- -5'
18646 3' -54.9 NC_004682.1 + 25651 0.67 0.683043
Target:  5'- cGGGCGCUCCaCUggggUCCGGguaccaACCGGc -3'
miRNA:   3'- cCUCGCGAGG-GGa---AGGUUauc---UGGCC- -5'
18646 3' -54.9 NC_004682.1 + 1079 0.68 0.606337
Target:  5'- cGGAcaGCGCUCCaCUUCCucGAUGGGCUc- -3'
miRNA:   3'- -CCU--CGCGAGGgGAAGG--UUAUCUGGcc -5'
18646 3' -54.9 NC_004682.1 + 20011 0.69 0.562772
Target:  5'- uGGAgGCGCUCCCgagCaucgGGGCCGGc -3'
miRNA:   3'- -CCU-CGCGAGGGgaaGguuaUCUGGCC- -5'
18646 3' -54.9 NC_004682.1 + 30249 0.69 0.552
Target:  5'- cGGAucaGCGcCUCCCCggUCAcgucgcgagacGUGGACUGGa -3'
miRNA:   3'- -CCU---CGC-GAGGGGaaGGU-----------UAUCUGGCC- -5'
18646 3' -54.9 NC_004682.1 + 2247 0.69 0.552
Target:  5'- gGGAacccGUGuCUCCCUUggggCCuuGUGGACCGGu -3'
miRNA:   3'- -CCU----CGC-GAGGGGAa---GGu-UAUCUGGCC- -5'
18646 3' -54.9 NC_004682.1 + 5558 0.7 0.478738
Target:  5'- cGGGCGCUCgaCCgUCCAGUaccAGGCCGc -3'
miRNA:   3'- cCUCGCGAGg-GGaAGGUUA---UCUGGCc -5'
18646 3' -54.9 NC_004682.1 + 13654 0.73 0.332382
Target:  5'- aGGAGCGCgggaaCCgCaUCCGGUAGACCu- -3'
miRNA:   3'- -CCUCGCGa----GGgGaAGGUUAUCUGGcc -5'
18646 3' -54.9 NC_004682.1 + 5374 0.74 0.316559
Target:  5'- -cAGCGCUCCUggUCCAggGGACCGu -3'
miRNA:   3'- ccUCGCGAGGGgaAGGUuaUCUGGCc -5'
18646 3' -54.9 NC_004682.1 + 392 1.12 0.000678
Target:  5'- cGGAGCGCUCCCCUUCCAAUAGACCGGc -3'
miRNA:   3'- -CCUCGCGAGGGGAAGGUUAUCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.