Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 552 | 1.1 | 0.000395 |
Target: 5'- aGUGACCGGUCAACCCGCCUACCCGACg -3' miRNA: 3'- -CACUGGCCAGUUGGGCGGAUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 41333 | 0.82 | 0.043942 |
Target: 5'- gGUGGCCGGUCgGACCCGUCcggGCUCGACu -3' miRNA: 3'- -CACUGGCCAG-UUGGGCGGa--UGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 4891 | 0.72 | 0.219109 |
Target: 5'- -gGGCuCGGUgAGCCCGCgCUACUCGGg -3' miRNA: 3'- caCUG-GCCAgUUGGGCG-GAUGGGCUg -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 7907 | 0.71 | 0.255497 |
Target: 5'- --uGCCGGugUCGA-CCGCCuUGCCCGACa -3' miRNA: 3'- cacUGGCC--AGUUgGGCGG-AUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 30386 | 0.71 | 0.268012 |
Target: 5'- --uGCCGGUaGACCCcucacggGCCUACUCGGCg -3' miRNA: 3'- cacUGGCCAgUUGGG-------CGGAUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 38564 | 0.71 | 0.268684 |
Target: 5'- cGUGGCCGGUC-ACCgGCCUGCgUCa-- -3' miRNA: 3'- -CACUGGCCAGuUGGgCGGAUG-GGcug -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 40752 | 0.7 | 0.289485 |
Target: 5'- -gGACCGGcCAGCCCGaCUGgCgGGCa -3' miRNA: 3'- caCUGGCCaGUUGGGCgGAUgGgCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 23962 | 0.7 | 0.289485 |
Target: 5'- uGUGGCCGGU--GCCCGUCagGCCCa-- -3' miRNA: 3'- -CACUGGCCAguUGGGCGGa-UGGGcug -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 24774 | 0.7 | 0.30702 |
Target: 5'- -cGACUGuGUCGaagaaguucgagaacACCUGCUUACCCGAg -3' miRNA: 3'- caCUGGC-CAGU---------------UGGGCGGAUGGGCUg -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 31002 | 0.69 | 0.326138 |
Target: 5'- -cGACCGGUugaucaaggagggCGACCCGCUcGCCgaGGCg -3' miRNA: 3'- caCUGGCCA-------------GUUGGGCGGaUGGg-CUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 3754 | 0.69 | 0.326138 |
Target: 5'- cGUGG-CGGUCAGCUCGCCUucgguguACUCGGu -3' miRNA: 3'- -CACUgGCCAGUUGGGCGGA-------UGGGCUg -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 3257 | 0.69 | 0.326921 |
Target: 5'- -gGACgCGGUUgcccgcgcccuGGCCCGCCguggUGCCCGAg -3' miRNA: 3'- caCUG-GCCAG-----------UUGGGCGG----AUGGGCUg -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 36331 | 0.69 | 0.34287 |
Target: 5'- aGUGGgacaacgacgcuCCGGUCcuGCCCGCUcagUACCgCGACa -3' miRNA: 3'- -CACU------------GGCCAGu-UGGGCGG---AUGG-GCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 11899 | 0.69 | 0.358533 |
Target: 5'- gGUGAUCGGcuugcgcUCGGCCuCGCCgguCCaCGACg -3' miRNA: 3'- -CACUGGCC-------AGUUGG-GCGGau-GG-GCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 11539 | 0.69 | 0.367828 |
Target: 5'- cUGAaCGG-CAACCCGCUU-CUCGACg -3' miRNA: 3'- cACUgGCCaGUUGGGCGGAuGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 12086 | 0.68 | 0.37642 |
Target: 5'- cUGACCacggcgucgGGUCcGCagggcaaCGCCUACCUGGCg -3' miRNA: 3'- cACUGG---------CCAGuUGg------GCGGAUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 38627 | 0.68 | 0.409366 |
Target: 5'- gGUGACCGGcCAcggcucuacaacacGCUCGCuCUGCUgCGGCa -3' miRNA: 3'- -CACUGGCCaGU--------------UGGGCG-GAUGG-GCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 5409 | 0.67 | 0.437361 |
Target: 5'- gGUGACCGaccccgacguguucGUCAagaACCCGCgUGCgCUGGCc -3' miRNA: 3'- -CACUGGC--------------CAGU---UGGGCGgAUG-GGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 39806 | 0.67 | 0.440221 |
Target: 5'- -cGACCGcGUaUAGCgCGCC-GCCCGAUg -3' miRNA: 3'- caCUGGC-CA-GUUGgGCGGaUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 26482 | 0.67 | 0.440221 |
Target: 5'- -cGGCUGGc---CCCGCCgacguucgACCCGGCg -3' miRNA: 3'- caCUGGCCaguuGGGCGGa-------UGGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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