Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 552 | 1.1 | 0.000395 |
Target: 5'- aGUGACCGGUCAACCCGCCUACCCGACg -3' miRNA: 3'- -CACUGGCCAGUUGGGCGGAUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 9175 | 0.66 | 0.537779 |
Target: 5'- -cGACCaaccuguacgcacaGaUCGACCCGCgcACCCGACa -3' miRNA: 3'- caCUGG--------------CcAGUUGGGCGgaUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 24018 | 0.66 | 0.534636 |
Target: 5'- -gGGCCGGUCGuucaucguccgguuCaCCGaCUACCCGAa -3' miRNA: 3'- caCUGGCCAGUu-------------G-GGCgGAUGGGCUg -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 5105 | 0.66 | 0.509738 |
Target: 5'- -cGACCcccguGGUCGacGCCgCGCCgauCCUGGCg -3' miRNA: 3'- caCUGG-----CCAGU--UGG-GCGGau-GGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 20987 | 0.66 | 0.489367 |
Target: 5'- uGUGGacgcucCCGGaCAACCCGCUcgACCCcACa -3' miRNA: 3'- -CACU------GGCCaGUUGGGCGGa-UGGGcUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 5832 | 0.66 | 0.489367 |
Target: 5'- -cGACgCGGU-GACCCgcGCCUACCuguuCGACg -3' miRNA: 3'- caCUG-GCCAgUUGGG--CGGAUGG----GCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 49253 | 0.67 | 0.459552 |
Target: 5'- aUGACgCGGUacuCCCGCUcACCCGuCu -3' miRNA: 3'- cACUG-GCCAguuGGGCGGaUGGGCuG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 39806 | 0.67 | 0.440221 |
Target: 5'- -cGACCGcGUaUAGCgCGCC-GCCCGAUg -3' miRNA: 3'- caCUGGC-CA-GUUGgGCGGaUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 5409 | 0.67 | 0.437361 |
Target: 5'- gGUGACCGaccccgacguguucGUCAagaACCCGCgUGCgCUGGCc -3' miRNA: 3'- -CACUGGC--------------CAGU---UGGGCGgAUG-GGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 12086 | 0.68 | 0.37642 |
Target: 5'- cUGACCacggcgucgGGUCcGCagggcaaCGCCUACCUGGCg -3' miRNA: 3'- cACUGG---------CCAGuUGg------GCGGAUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 11539 | 0.69 | 0.367828 |
Target: 5'- cUGAaCGG-CAACCCGCUU-CUCGACg -3' miRNA: 3'- cACUgGCCaGUUGGGCGGAuGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 40752 | 0.7 | 0.289485 |
Target: 5'- -gGACCGGcCAGCCCGaCUGgCgGGCa -3' miRNA: 3'- caCUGGCCaGUUGGGCgGAUgGgCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 38564 | 0.71 | 0.268684 |
Target: 5'- cGUGGCCGGUC-ACCgGCCUGCgUCa-- -3' miRNA: 3'- -CACUGGCCAGuUGGgCGGAUG-GGcug -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 4891 | 0.72 | 0.219109 |
Target: 5'- -gGGCuCGGUgAGCCCGCgCUACUCGGg -3' miRNA: 3'- caCUG-GCCAgUUGGGCG-GAUGGGCUg -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 5270 | 0.66 | 0.499507 |
Target: 5'- -gGugCaGUCGGCCUGCUUcaGCCCGuCa -3' miRNA: 3'- caCugGcCAGUUGGGCGGA--UGGGCuG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 50659 | 0.66 | 0.499507 |
Target: 5'- ---cCCGGUaccccaccuGCCCuGCCUACCCGGu -3' miRNA: 3'- cacuGGCCAgu-------UGGG-CGGAUGGGCUg -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 46266 | 0.66 | 0.509738 |
Target: 5'- cUGGCCGGU-GACCuCGCCgagaAgCUGACg -3' miRNA: 3'- cACUGGCCAgUUGG-GCGGa---UgGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 17892 | 0.66 | 0.520056 |
Target: 5'- aUGACCG---AGCCCGCC-AUCUGACc -3' miRNA: 3'- cACUGGCcagUUGGGCGGaUGGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 16877 | 0.66 | 0.536731 |
Target: 5'- uGUGACCaaccaacccauacgGGUCAGgCCGaggaacuUCUugCCGACg -3' miRNA: 3'- -CACUGG--------------CCAGUUgGGC-------GGAugGGCUG- -5' |
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18647 | 5' | -58.6 | NC_004682.1 | + | 41333 | 0.82 | 0.043942 |
Target: 5'- gGUGGCCGGUCgGACCCGUCcggGCUCGACu -3' miRNA: 3'- -CACUGGCCAG-UUGGGCGGa--UGGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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