miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18693 5' -56.8 NC_004682.1 + 873 0.66 0.59016
Target:  5'- ---cGGCCAGGgUGGcguUCGGUCGGucGc -3'
miRNA:   3'- ucuaCCGGUCCgACU---AGCCGGUCuuC- -5'
18693 5' -56.8 NC_004682.1 + 44331 0.66 0.59016
Target:  5'- ---gGGUUGGGCUGAUa-GCCAGAGa -3'
miRNA:   3'- ucuaCCGGUCCGACUAgcCGGUCUUc -5'
18693 5' -56.8 NC_004682.1 + 40831 0.66 0.578056
Target:  5'- gGGGUGcccgccaGUCGGGCUGGcCGGuCCAGAu- -3'
miRNA:   3'- -UCUAC-------CGGUCCGACUaGCC-GGUCUuc -5'
18693 5' -56.8 NC_004682.1 + 23726 0.66 0.546436
Target:  5'- aGGAgGGCCgcAGGCccGUCGGUCAGGGu -3'
miRNA:   3'- -UCUaCCGG--UCCGacUAGCCGGUCUUc -5'
18693 5' -56.8 NC_004682.1 + 42552 0.67 0.535657
Target:  5'- gAGGUGGCCgcagggAGGCcGAcccCGGCCAGc-- -3'
miRNA:   3'- -UCUACCGG------UCCGaCUa--GCCGGUCuuc -5'
18693 5' -56.8 NC_004682.1 + 43471 0.67 0.524953
Target:  5'- -cAUGGCCGGGaaGAaaGGCguGAAGg -3'
miRNA:   3'- ucUACCGGUCCgaCUagCCGguCUUC- -5'
18693 5' -56.8 NC_004682.1 + 30177 0.67 0.490247
Target:  5'- cAGAUGGguCCGGuGUUGAUCGGUaccgaccccgagguCGGAGGa -3'
miRNA:   3'- -UCUACC--GGUC-CGACUAGCCG--------------GUCUUC- -5'
18693 5' -56.8 NC_004682.1 + 32044 0.68 0.469739
Target:  5'- cAGAUGGCCGucgccuucauGGCgagcugggacucgcUGGUCGaGUCGGGAGa -3'
miRNA:   3'- -UCUACCGGU----------CCG--------------ACUAGC-CGGUCUUC- -5'
18693 5' -56.8 NC_004682.1 + 19756 0.68 0.462665
Target:  5'- ----aGCCAgaucGGCUGGUCGGUCGGAu- -3'
miRNA:   3'- ucuacCGGU----CCGACUAGCCGGUCUuc -5'
18693 5' -56.8 NC_004682.1 + 35041 0.69 0.423365
Target:  5'- uGGGUGGCCguggaggaAGGCUGggCuGGCCcGAAc -3'
miRNA:   3'- -UCUACCGG--------UCCGACuaG-CCGGuCUUc -5'
18693 5' -56.8 NC_004682.1 + 5949 0.69 0.377171
Target:  5'- ---gGGCgAGcGCUGGcuggccaaguUCGGCCAGGAGu -3'
miRNA:   3'- ucuaCCGgUC-CGACU----------AGCCGGUCUUC- -5'
18693 5' -56.8 NC_004682.1 + 38020 0.69 0.377171
Target:  5'- aAGA-GGCCcagcGGCUGAUucaCGGCCcGAGGa -3'
miRNA:   3'- -UCUaCCGGu---CCGACUA---GCCGGuCUUC- -5'
18693 5' -56.8 NC_004682.1 + 23427 0.73 0.222236
Target:  5'- uAGGUGGCgGGGcCUGGaacuaCGGCCAGGAc -3'
miRNA:   3'- -UCUACCGgUCC-GACUa----GCCGGUCUUc -5'
18693 5' -56.8 NC_004682.1 + 12144 0.74 0.205142
Target:  5'- -cGUGGUCAGGUUGGugUCGGCCAGc-- -3'
miRNA:   3'- ucUACCGGUCCGACU--AGCCGGUCuuc -5'
18693 5' -56.8 NC_004682.1 + 13743 1.09 0.000503
Target:  5'- gAGAUGGCCAGGCUGAUCGGCCAGAAGg -3'
miRNA:   3'- -UCUACCGGUCCGACUAGCCGGUCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.