miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18708 5' -54.1 NC_004682.1 + 39180 0.66 0.702873
Target:  5'- cUgCACaGcCGGUGGGUUGUCCAGGUAg -3'
miRNA:   3'- uAgGUG-CaGUCAUUCGACGGGUUCGU- -5'
18708 5' -54.1 NC_004682.1 + 38523 0.66 0.669012
Target:  5'- cAUCC-CGaCGGUGGGCgUGCCagGAGCAc -3'
miRNA:   3'- -UAGGuGCaGUCAUUCG-ACGGg-UUCGU- -5'
18708 5' -54.1 NC_004682.1 + 12990 0.67 0.657634
Target:  5'- uUCUuCGUCAGUGGGCugacgUGCCCAA-CGg -3'
miRNA:   3'- uAGGuGCAGUCAUUCG-----ACGGGUUcGU- -5'
18708 5' -54.1 NC_004682.1 + 14233 0.68 0.589226
Target:  5'- cUUCACGUCAGgcAGCgccGCCCGGa-- -3'
miRNA:   3'- uAGGUGCAGUCauUCGa--CGGGUUcgu -5'
18708 5' -54.1 NC_004682.1 + 11595 0.68 0.5779
Target:  5'- cGUUCAgCGggaGGU-GGCUGCCCGAGCc -3'
miRNA:   3'- -UAGGU-GCag-UCAuUCGACGGGUUCGu -5'
18708 5' -54.1 NC_004682.1 + 23906 0.68 0.566624
Target:  5'- -gUCAgGUCGGUGAccGCauUGCCCAGGCc -3'
miRNA:   3'- uaGGUgCAGUCAUU--CG--ACGGGUUCGu -5'
18708 5' -54.1 NC_004682.1 + 22512 0.69 0.511263
Target:  5'- cGUCCuCaUCAGcAAGCUGCuCCAAGUAg -3'
miRNA:   3'- -UAGGuGcAGUCaUUCGACG-GGUUCGU- -5'
18708 5' -54.1 NC_004682.1 + 563 0.69 0.511263
Target:  5'- --gCGCGUCGGUGAGCgccGCCgGaAGCGg -3'
miRNA:   3'- uagGUGCAGUCAUUCGa--CGGgU-UCGU- -5'
18708 5' -54.1 NC_004682.1 + 35167 0.7 0.43791
Target:  5'- -gCCGCGauacCGGUGAGCUGUCCAcccuccguAGCGa -3'
miRNA:   3'- uaGGUGCa---GUCAUUCGACGGGU--------UCGU- -5'
18708 5' -54.1 NC_004682.1 + 25628 0.73 0.295712
Target:  5'- gGUCC-CGUCgaAGUAGcGCUGUCCGGGCGc -3'
miRNA:   3'- -UAGGuGCAG--UCAUU-CGACGGGUUCGU- -5'
18708 5' -54.1 NC_004682.1 + 46255 0.76 0.197527
Target:  5'- cGUCCAUGUCAGcucgccAGC-GCCCGAGCGa -3'
miRNA:   3'- -UAGGUGCAGUCau----UCGaCGGGUUCGU- -5'
18708 5' -54.1 NC_004682.1 + 22467 1.07 0.001232
Target:  5'- cAUCCACGUCAGUAAGCUGCCCAAGCAg -3'
miRNA:   3'- -UAGGUGCAGUCAUUCGACGGGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.