miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18717 3' -54.1 NC_004682.1 + 24509 0.66 0.786188
Target:  5'- gCAUCagccaGGUcGgcgCGGACUaccGGGGCUGGg -3'
miRNA:   3'- -GUAGg----CCAuCa--GCUUGAc--UCCCGACC- -5'
18717 3' -54.1 NC_004682.1 + 39197 0.66 0.786188
Target:  5'- uGUCCaGGUAGUCGA--UGAaccGCUGGa -3'
miRNA:   3'- gUAGG-CCAUCAGCUugACUcc-CGACC- -5'
18717 3' -54.1 NC_004682.1 + 41818 0.66 0.786188
Target:  5'- --cCCGGUcgcuGUCGAucCUGAccGGCUGGa -3'
miRNA:   3'- guaGGCCAu---CAGCUu-GACUc-CCGACC- -5'
18717 3' -54.1 NC_004682.1 + 35476 0.67 0.713281
Target:  5'- --gCCGGUGccuucGUCaucgaGGACUcccgcGAGGGCUGGg -3'
miRNA:   3'- guaGGCCAU-----CAG-----CUUGA-----CUCCCGACC- -5'
18717 3' -54.1 NC_004682.1 + 3166 0.68 0.680584
Target:  5'- gGUCgCGGUGGUgGggUagccGGGCUGGc -3'
miRNA:   3'- gUAG-GCCAUCAgCuuGacu-CCCGACC- -5'
18717 3' -54.1 NC_004682.1 + 8220 0.68 0.679485
Target:  5'- gAUCCGGUcacccuuGGUgagGGGCUGAaucgugcuGGGCUGGc -3'
miRNA:   3'- gUAGGCCA-------UCAg--CUUGACU--------CCCGACC- -5'
18717 3' -54.1 NC_004682.1 + 26263 0.69 0.581106
Target:  5'- -uUCCGGUGGgUGAACUGcuGGGCa-- -3'
miRNA:   3'- guAGGCCAUCaGCUUGACu-CCCGacc -5'
18717 3' -54.1 NC_004682.1 + 29078 0.7 0.505714
Target:  5'- gGUCCaGUGGcagggggaGGACUGGGGGCUGc -3'
miRNA:   3'- gUAGGcCAUCag------CUUGACUCCCGACc -5'
18717 3' -54.1 NC_004682.1 + 31812 0.7 0.502569
Target:  5'- uCAUCUGGgcuuccUCGGACUGGacacggagacgaccGGGCUGGa -3'
miRNA:   3'- -GUAGGCCauc---AGCUUGACU--------------CCCGACC- -5'
18717 3' -54.1 NC_004682.1 + 28967 1.1 0.001114
Target:  5'- cCAUCCGGUAGUCGAACUGAGGGCUGGu -3'
miRNA:   3'- -GUAGGCCAUCAGCUUGACUCCCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.