miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18731 3' -59.6 NC_004682.1 + 18201 0.67 0.397832
Target:  5'- aCCGGCaacCACCGCGCAUgGCGCu---- -3'
miRNA:   3'- cGGCCG---GUGGUGCGUGaCGCGcuacc -5'
18731 3' -59.6 NC_004682.1 + 19965 0.67 0.442773
Target:  5'- -gCGGCCAUCgcccgcaACGCgACUGCcGCGAcGGu -3'
miRNA:   3'- cgGCCGGUGG-------UGCG-UGACG-CGCUaCC- -5'
18731 3' -59.6 NC_004682.1 + 22628 0.67 0.406765
Target:  5'- gGCCGGCguguccuucgaCACCcaACGCGCUGCGUu---- -3'
miRNA:   3'- -CGGCCG-----------GUGG--UGCGUGACGCGcuacc -5'
18731 3' -59.6 NC_004682.1 + 22849 0.71 0.234901
Target:  5'- cCCGGa-GCC-CGCGCuggUGCGCGGUGGc -3'
miRNA:   3'- cGGCCggUGGuGCGUG---ACGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 22965 0.71 0.240914
Target:  5'- cGCUGcuCC-CCugGCGCUcGCGUGGUGGa -3'
miRNA:   3'- -CGGCc-GGuGGugCGUGA-CGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 23255 0.66 0.472639
Target:  5'- cGgUGGCCugCGCGaggaGCUGCG-GAcGGa -3'
miRNA:   3'- -CgGCCGGugGUGCg---UGACGCgCUaCC- -5'
18731 3' -59.6 NC_004682.1 + 23903 0.77 0.089829
Target:  5'- aCCGGCCACacccccgaggACGCgGCUGcCGCGAUGGg -3'
miRNA:   3'- cGGCCGGUGg---------UGCG-UGAC-GCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 24028 0.7 0.286643
Target:  5'- cCCGcGCCagggacucgcACCGCGUGCUGCGgggGAUGGa -3'
miRNA:   3'- cGGC-CGG----------UGGUGCGUGACGCg--CUACC- -5'
18731 3' -59.6 NC_004682.1 + 27969 0.75 0.120519
Target:  5'- gGCCGacgacggccaugauGCCACCGCGCACcaGCGCGGgcuccgGGa -3'
miRNA:   3'- -CGGC--------------CGGUGGUGCGUGa-CGCGCUa-----CC- -5'
18731 3' -59.6 NC_004682.1 + 28490 0.68 0.389026
Target:  5'- aUgGGUCACCGCGCcgacacCUGCGaaGGUGGg -3'
miRNA:   3'- cGgCCGGUGGUGCGu-----GACGCg-CUACC- -5'
18731 3' -59.6 NC_004682.1 + 30097 0.69 0.338942
Target:  5'- cCCGGaCCACCGgGCuccCUGCuuguCGAUGGu -3'
miRNA:   3'- cGGCC-GGUGGUgCGu--GACGc---GCUACC- -5'
18731 3' -59.6 NC_004682.1 + 32621 0.68 0.389026
Target:  5'- aGCgGGCCuugAUgACGUAgcgccaUGCGCGGUGGu -3'
miRNA:   3'- -CGgCCGG---UGgUGCGUg-----ACGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 32713 0.72 0.196274
Target:  5'- cGCCuuGGCCGCgauguccgaCGCGCcCUGCGCGAagcUGGc -3'
miRNA:   3'- -CGG--CCGGUG---------GUGCGuGACGCGCU---ACC- -5'
18731 3' -59.6 NC_004682.1 + 35123 1.11 0.000267
Target:  5'- cGCCGGCCACCACGCACUGCGCGAUGGc -3'
miRNA:   3'- -CGGCCGGUGGUGCGUGACGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 38430 0.7 0.259723
Target:  5'- -gCGGCUGCCACGC-CUGUGCuccUGGc -3'
miRNA:   3'- cgGCCGGUGGUGCGuGACGCGcu-ACC- -5'
18731 3' -59.6 NC_004682.1 + 38567 0.69 0.315715
Target:  5'- gGCCGGUCACCG-GC-CUGCGUcAUGu -3'
miRNA:   3'- -CGGCCGGUGGUgCGuGACGCGcUACc -5'
18731 3' -59.6 NC_004682.1 + 38858 0.69 0.315714
Target:  5'- -aUGGCaGCCGCGUcgaACUugaGCGCGAUGGc -3'
miRNA:   3'- cgGCCGgUGGUGCG---UGA---CGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 41873 0.71 0.251429
Target:  5'- cGCCGaGCCGgaagcccucaagcuCCugGCGC-GCuGCGAUGGc -3'
miRNA:   3'- -CGGC-CGGU--------------GGugCGUGaCG-CGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 43811 0.67 0.425003
Target:  5'- gGUCgGGCCGCUACG-ACgGCGCGAg-- -3'
miRNA:   3'- -CGG-CCGGUGGUGCgUGaCGCGCUacc -5'
18731 3' -59.6 NC_004682.1 + 44738 0.71 0.247054
Target:  5'- cGCCGGUgGCCACGUACUcccCGUGGUc- -3'
miRNA:   3'- -CGGCCGgUGGUGCGUGAc--GCGCUAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.