Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18731 | 3' | -59.6 | NC_004682.1 | + | 1978 | 0.66 | 0.482489 |
Target: 5'- aGUCGGCCACCugGC-C-GuCGauGUGGa -3' miRNA: 3'- -CGGCCGGUGGugCGuGaC-GCgcUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 4382 | 0.75 | 0.135414 |
Target: 5'- aGCC-GCCGCCACGgGCgcggaGCGCGGUGc -3' miRNA: 3'- -CGGcCGGUGGUGCgUGa----CGCGCUACc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5121 | 0.67 | 0.44372 |
Target: 5'- cGCCGcGCCGauCCugGCGCgUGCuGCGGg-- -3' miRNA: 3'- -CGGC-CGGU--GGugCGUG-ACG-CGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5447 | 0.66 | 0.502478 |
Target: 5'- cGCUGGCCgaucugaaguggGCCG-GCAUcgGCGCGGccUGGu -3' miRNA: 3'- -CGGCCGG------------UGGUgCGUGa-CGCGCU--ACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5505 | 0.7 | 0.272917 |
Target: 5'- cCCGGaCAUCaACGCGCUGUGCGAc-- -3' miRNA: 3'- cGGCCgGUGG-UGCGUGACGCGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5617 | 0.71 | 0.229015 |
Target: 5'- cGCUGGa-ACCGCGCACU-CGCGGUcGGu -3' miRNA: 3'- -CGGCCggUGGUGCGUGAcGCGCUA-CC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 6505 | 0.72 | 0.191232 |
Target: 5'- gGCgGGCUACU-CGCAagGCGCGGUGGu -3' miRNA: 3'- -CGgCCGGUGGuGCGUgaCGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 9438 | 0.66 | 0.492437 |
Target: 5'- cGCuCGGUCACCgACGCAgCUGCcCGGa-- -3' miRNA: 3'- -CG-GCCGGUGG-UGCGU-GACGcGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 10624 | 0.67 | 0.42778 |
Target: 5'- uGUCGGCguCCugccaucucgacuucGCGCACUgcucguaGCGCGAccUGGg -3' miRNA: 3'- -CGGCCGguGG---------------UGCGUGA-------CGCGCU--ACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 10626 | 0.73 | 0.163312 |
Target: 5'- cGUCGGCCACUcgAUGgGCgGCGgGAUGGu -3' miRNA: 3'- -CGGCCGGUGG--UGCgUGaCGCgCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 10754 | 0.75 | 0.128286 |
Target: 5'- uGCgGGCCACacaGCGCcucuCggGCGCGGUGGu -3' miRNA: 3'- -CGgCCGGUGg--UGCGu---Ga-CGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 14287 | 0.67 | 0.406765 |
Target: 5'- uGCCGGUgAucgagaugaCCGCGUACggGCGUGA-GGg -3' miRNA: 3'- -CGGCCGgU---------GGUGCGUGa-CGCGCUaCC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 15064 | 0.66 | 0.472639 |
Target: 5'- cCCGGCgCACCgACGCcUUGUGgGcGUGGa -3' miRNA: 3'- cGGCCG-GUGG-UGCGuGACGCgC-UACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 15709 | 0.77 | 0.087374 |
Target: 5'- aCCacGCCAUCGCGCAgUGCGUGGUGGc -3' miRNA: 3'- cGGc-CGGUGGUGCGUgACGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 15879 | 0.67 | 0.415822 |
Target: 5'- uGCUuGCCGCCGCGCuucuCUGCGUaGAa-- -3' miRNA: 3'- -CGGcCGGUGGUGCGu---GACGCG-CUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 16228 | 0.71 | 0.225543 |
Target: 5'- cGUgGGCCACCucgGCGUggcgucguuccuggcGCUGUGCgGAUGGa -3' miRNA: 3'- -CGgCCGGUGG---UGCG---------------UGACGCG-CUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 16637 | 0.66 | 0.502478 |
Target: 5'- -aCGGCUuCCGCaaguuccagcagGCGCUGCGCGGc-- -3' miRNA: 3'- cgGCCGGuGGUG------------CGUGACGCGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 16911 | 0.66 | 0.482489 |
Target: 5'- uGCCGGUguCgGCGCugUGgCGCucggcAUGGa -3' miRNA: 3'- -CGGCCGguGgUGCGugAC-GCGc----UACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 17303 | 0.67 | 0.44372 |
Target: 5'- aGCUGGCCAgggUCAgGaacgACUGCGUGAacUGGu -3' miRNA: 3'- -CGGCCGGU---GGUgCg---UGACGCGCU--ACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 17798 | 0.67 | 0.434303 |
Target: 5'- cCCGGCCcUCGC-CAC--CGCGAUGGg -3' miRNA: 3'- cGGCCGGuGGUGcGUGacGCGCUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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