Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18731 | 3' | -59.6 | NC_004682.1 | + | 16637 | 0.66 | 0.502478 |
Target: 5'- -aCGGCUuCCGCaaguuccagcagGCGCUGCGCGGc-- -3' miRNA: 3'- cgGCCGGuGGUG------------CGUGACGCGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 14287 | 0.67 | 0.406765 |
Target: 5'- uGCCGGUgAucgagaugaCCGCGUACggGCGUGA-GGg -3' miRNA: 3'- -CGGCCGgU---------GGUGCGUGa-CGCGCUaCC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 17798 | 0.67 | 0.434303 |
Target: 5'- cCCGGCCcUCGC-CAC--CGCGAUGGg -3' miRNA: 3'- cGGCCGGuGGUGcGUGacGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 19965 | 0.67 | 0.442773 |
Target: 5'- -gCGGCCAUCgcccgcaACGCgACUGCcGCGAcGGu -3' miRNA: 3'- cgGCCGGUGG-------UGCG-UGACG-CGCUaCC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5121 | 0.67 | 0.44372 |
Target: 5'- cGCCGcGCCGauCCugGCGCgUGCuGCGGg-- -3' miRNA: 3'- -CGGC-CGGU--GGugCGUG-ACG-CGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 23255 | 0.66 | 0.472639 |
Target: 5'- cGgUGGCCugCGCGaggaGCUGCG-GAcGGa -3' miRNA: 3'- -CgGCCGGugGUGCg---UGACGCgCUaCC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 16911 | 0.66 | 0.482489 |
Target: 5'- uGCCGGUguCgGCGCugUGgCGCucggcAUGGa -3' miRNA: 3'- -CGGCCGguGgUGCGugAC-GCGc----UACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 9438 | 0.66 | 0.492437 |
Target: 5'- cGCuCGGUCACCgACGCAgCUGCcCGGa-- -3' miRNA: 3'- -CG-GCCGGUGG-UGCGU-GACGcGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5447 | 0.66 | 0.502478 |
Target: 5'- cGCUGGCCgaucugaaguggGCCG-GCAUcgGCGCGGccUGGu -3' miRNA: 3'- -CGGCCGG------------UGGUgCGUGa-CGCGCU--ACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 32621 | 0.68 | 0.389026 |
Target: 5'- aGCgGGCCuugAUgACGUAgcgccaUGCGCGGUGGu -3' miRNA: 3'- -CGgCCGG---UGgUGCGUg-----ACGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 38567 | 0.69 | 0.315715 |
Target: 5'- gGCCGGUCACCG-GC-CUGCGUcAUGu -3' miRNA: 3'- -CGGCCGGUGGUgCGuGACGCGcUACc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5505 | 0.7 | 0.272917 |
Target: 5'- cCCGGaCAUCaACGCGCUGUGCGAc-- -3' miRNA: 3'- cGGCCgGUGG-UGCGUGACGCGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 23903 | 0.77 | 0.089829 |
Target: 5'- aCCGGCCACacccccgaggACGCgGCUGcCGCGAUGGg -3' miRNA: 3'- cGGCCGGUGg---------UGCG-UGAC-GCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 4382 | 0.75 | 0.135414 |
Target: 5'- aGCC-GCCGCCACGgGCgcggaGCGCGGUGc -3' miRNA: 3'- -CGGcCGGUGGUGCgUGa----CGCGCUACc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 6505 | 0.72 | 0.191232 |
Target: 5'- gGCgGGCUACU-CGCAagGCGCGGUGGu -3' miRNA: 3'- -CGgCCGGUGGuGCGUgaCGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5617 | 0.71 | 0.229015 |
Target: 5'- cGCUGGa-ACCGCGCACU-CGCGGUcGGu -3' miRNA: 3'- -CGGCCggUGGUGCGUGAcGCGCUA-CC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 22849 | 0.71 | 0.234901 |
Target: 5'- cCCGGa-GCC-CGCGCuggUGCGCGGUGGc -3' miRNA: 3'- cGGCCggUGGuGCGUG---ACGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 22965 | 0.71 | 0.240914 |
Target: 5'- cGCUGcuCC-CCugGCGCUcGCGUGGUGGa -3' miRNA: 3'- -CGGCc-GGuGGugCGUGA-CGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 44738 | 0.71 | 0.247054 |
Target: 5'- cGCCGGUgGCCACGUACUcccCGUGGUc- -3' miRNA: 3'- -CGGCCGgUGGUGCGUGAc--GCGCUAcc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 38430 | 0.7 | 0.259723 |
Target: 5'- -gCGGCUGCCACGC-CUGUGCuccUGGc -3' miRNA: 3'- cgGCCGGUGGUGCGuGACGCGcu-ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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