miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18731 3' -59.6 NC_004682.1 + 38430 0.7 0.259723
Target:  5'- -gCGGCUGCCACGC-CUGUGCuccUGGc -3'
miRNA:   3'- cgGCCGGUGGUGCGuGACGCGcu-ACC- -5'
18731 3' -59.6 NC_004682.1 + 38858 0.69 0.315714
Target:  5'- -aUGGCaGCCGCGUcgaACUugaGCGCGAUGGc -3'
miRNA:   3'- cgGCCGgUGGUGCG---UGA---CGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 24028 0.7 0.286643
Target:  5'- cCCGcGCCagggacucgcACCGCGUGCUGCGgggGAUGGa -3'
miRNA:   3'- cGGC-CGG----------UGGUGCGUGACGCg--CUACC- -5'
18731 3' -59.6 NC_004682.1 + 41873 0.71 0.251429
Target:  5'- cGCCGaGCCGgaagcccucaagcuCCugGCGC-GCuGCGAUGGc -3'
miRNA:   3'- -CGGC-CGGU--------------GGugCGUGaCG-CGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 16228 0.71 0.225543
Target:  5'- cGUgGGCCACCucgGCGUggcgucguuccuggcGCUGUGCgGAUGGa -3'
miRNA:   3'- -CGgCCGGUGG---UGCG---------------UGACGCG-CUACC- -5'
18731 3' -59.6 NC_004682.1 + 32713 0.72 0.196274
Target:  5'- cGCCuuGGCCGCgauguccgaCGCGCcCUGCGCGAagcUGGc -3'
miRNA:   3'- -CGG--CCGGUG---------GUGCGuGACGCGCU---ACC- -5'
18731 3' -59.6 NC_004682.1 + 10626 0.73 0.163312
Target:  5'- cGUCGGCCACUcgAUGgGCgGCGgGAUGGu -3'
miRNA:   3'- -CGGCCGGUGG--UGCgUGaCGCgCUACC- -5'
18731 3' -59.6 NC_004682.1 + 10754 0.75 0.128286
Target:  5'- uGCgGGCCACacaGCGCcucuCggGCGCGGUGGu -3'
miRNA:   3'- -CGgCCGGUGg--UGCGu---Ga-CGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 27969 0.75 0.120519
Target:  5'- gGCCGacgacggccaugauGCCACCGCGCACcaGCGCGGgcuccgGGa -3'
miRNA:   3'- -CGGC--------------CGGUGGUGCGUGa-CGCGCUa-----CC- -5'
18731 3' -59.6 NC_004682.1 + 30097 0.69 0.338942
Target:  5'- cCCGGaCCACCGgGCuccCUGCuuguCGAUGGu -3'
miRNA:   3'- cGGCC-GGUGGUgCGu--GACGc---GCUACC- -5'
18731 3' -59.6 NC_004682.1 + 28490 0.68 0.389026
Target:  5'- aUgGGUCACCGCGCcgacacCUGCGaaGGUGGg -3'
miRNA:   3'- cGgCCGGUGGUGCGu-----GACGCg-CUACC- -5'
18731 3' -59.6 NC_004682.1 + 18201 0.67 0.397832
Target:  5'- aCCGGCaacCACCGCGCAUgGCGCu---- -3'
miRNA:   3'- cGGCCG---GUGGUGCGUGaCGCGcuacc -5'
18731 3' -59.6 NC_004682.1 + 1978 0.66 0.482489
Target:  5'- aGUCGGCCACCugGC-C-GuCGauGUGGa -3'
miRNA:   3'- -CGGCCGGUGGugCGuGaC-GCgcUACC- -5'
18731 3' -59.6 NC_004682.1 + 47378 0.66 0.481499
Target:  5'- gGCUGGCCAaggacccgcuaguCCugGCGCUG-GcCGA-GGa -3'
miRNA:   3'- -CGGCCGGU-------------GGugCGUGACgC-GCUaCC- -5'
18731 3' -59.6 NC_004682.1 + 15064 0.66 0.472639
Target:  5'- cCCGGCgCACCgACGCcUUGUGgGcGUGGa -3'
miRNA:   3'- cGGCCG-GUGG-UGCGuGACGCgC-UACC- -5'
18731 3' -59.6 NC_004682.1 + 17303 0.67 0.44372
Target:  5'- aGCUGGCCAgggUCAgGaacgACUGCGUGAacUGGu -3'
miRNA:   3'- -CGGCCGGU---GGUgCg---UGACGCGCU--ACC- -5'
18731 3' -59.6 NC_004682.1 + 10624 0.67 0.42778
Target:  5'- uGUCGGCguCCugccaucucgacuucGCGCACUgcucguaGCGCGAccUGGg -3'
miRNA:   3'- -CGGCCGguGG---------------UGCGUGA-------CGCGCU--ACC- -5'
18731 3' -59.6 NC_004682.1 + 43811 0.67 0.425003
Target:  5'- gGUCgGGCCGCUACG-ACgGCGCGAg-- -3'
miRNA:   3'- -CGG-CCGGUGGUGCgUGaCGCGCUacc -5'
18731 3' -59.6 NC_004682.1 + 15879 0.67 0.415822
Target:  5'- uGCUuGCCGCCGCGCuucuCUGCGUaGAa-- -3'
miRNA:   3'- -CGGcCGGUGGUGCGu---GACGCG-CUacc -5'
18731 3' -59.6 NC_004682.1 + 22628 0.67 0.406765
Target:  5'- gGCCGGCguguccuucgaCACCcaACGCGCUGCGUu---- -3'
miRNA:   3'- -CGGCCG-----------GUGG--UGCGUGACGCGcuacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.