miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18732 5' -61.5 NC_004682.1 + 21243 0.66 0.405847
Target:  5'- cCCCG-CGuACCGCGUGaCCGuCGCUGa- -3'
miRNA:   3'- aGGGCaGC-UGGUGCGC-GGC-GUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 30272 0.66 0.405847
Target:  5'- cCCCGaagGACCAUGUcgccguuccagaGCCGCACCa-- -3'
miRNA:   3'- aGGGCag-CUGGUGCG------------CGGCGUGGcaa -5'
18732 5' -61.5 NC_004682.1 + 17895 0.66 0.396988
Target:  5'- aUCCCGUCGGUCACGCaacuGCUGCcucaCGUc -3'
miRNA:   3'- -AGGGCAGCUGGUGCG----CGGCGug--GCAa -5'
18732 5' -61.5 NC_004682.1 + 4848 0.66 0.388253
Target:  5'- --aCGUCGACCAgGUGaaguCCGCGCUGg- -3'
miRNA:   3'- aggGCAGCUGGUgCGC----GGCGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 48310 0.66 0.388253
Target:  5'- cUCUCGUCuuCCAUGacgauGCCGuCGCCGUUg -3'
miRNA:   3'- -AGGGCAGcuGGUGCg----CGGC-GUGGCAA- -5'
18732 5' -61.5 NC_004682.1 + 41003 0.66 0.385658
Target:  5'- cCuuGUaGGCCACGCGCaucgcuugcucccaCGCGCCGc- -3'
miRNA:   3'- aGggCAgCUGGUGCGCG--------------GCGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 5020 0.66 0.379646
Target:  5'- aUCUCGuUCGACCAgUGCGCCaCGCUGn- -3'
miRNA:   3'- -AGGGC-AGCUGGU-GCGCGGcGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 4616 0.66 0.379646
Target:  5'- gUCCCGgaGGCCACGC-UCGCuGCCGa- -3'
miRNA:   3'- -AGGGCagCUGGUGCGcGGCG-UGGCaa -5'
18732 5' -61.5 NC_004682.1 + 12907 0.66 0.362819
Target:  5'- aUCCCGUUGGgCACGUcaGCC-CACUGa- -3'
miRNA:   3'- -AGGGCAGCUgGUGCG--CGGcGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 44686 0.66 0.354602
Target:  5'- -gCCGUCGACuCGCaGCgGCC-CGCCGUc -3'
miRNA:   3'- agGGCAGCUG-GUG-CG-CGGcGUGGCAa -5'
18732 5' -61.5 NC_004682.1 + 16846 0.67 0.346517
Target:  5'- cCCCGaggCGuCCAUGcCGCagGCACCGUa -3'
miRNA:   3'- aGGGCa--GCuGGUGC-GCGg-CGUGGCAa -5'
18732 5' -61.5 NC_004682.1 + 37312 0.67 0.346517
Target:  5'- gUCCUGcUCGGCCcguCGUGCCgacGUACCGg- -3'
miRNA:   3'- -AGGGC-AGCUGGu--GCGCGG---CGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 38524 0.67 0.338565
Target:  5'- -gCCGUUGACCACGuUGuCCGCGaCGUa -3'
miRNA:   3'- agGGCAGCUGGUGC-GC-GGCGUgGCAa -5'
18732 5' -61.5 NC_004682.1 + 25629 0.67 0.330747
Target:  5'- gUCCCGUCGAaguagcgcuguCCGgGCGCUcCACUGg- -3'
miRNA:   3'- -AGGGCAGCU-----------GGUgCGCGGcGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 4087 0.67 0.330747
Target:  5'- gUCUCGUCGu---CGCGCUGCACUGc- -3'
miRNA:   3'- -AGGGCAGCugguGCGCGGCGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 28295 0.67 0.330747
Target:  5'- gUCCU-UCGACacccaACGCGCUGCGuuGUUg -3'
miRNA:   3'- -AGGGcAGCUGg----UGCGCGGCGUggCAA- -5'
18732 5' -61.5 NC_004682.1 + 39530 0.68 0.300811
Target:  5'- uUCCC-UCGGCCACGCaGUCGaCGCaCGg- -3'
miRNA:   3'- -AGGGcAGCUGGUGCG-CGGC-GUG-GCaa -5'
18732 5' -61.5 NC_004682.1 + 29555 0.68 0.286645
Target:  5'- gUCCCa--GACCAgGCaGCCGUGCCGa- -3'
miRNA:   3'- -AGGGcagCUGGUgCG-CGGCGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 49530 0.68 0.286645
Target:  5'- aCCUGUCgcgGACCAaguaGCGCuCGaCGCCGUa -3'
miRNA:   3'- aGGGCAG---CUGGUg---CGCG-GC-GUGGCAa -5'
18732 5' -61.5 NC_004682.1 + 32565 0.68 0.27301
Target:  5'- cUCCGaCGACCcucUGCGCgGCACCGa- -3'
miRNA:   3'- aGGGCaGCUGGu--GCGCGgCGUGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.